PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G185800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 172aa    MW: 18026.3 Da    PI: 6.7798
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G185800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000144567123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C+++F ++  L  H++ H
  Sevir.6G185800.1.p 45 FACNYCHRRFYSSQALGGHQNAH 67
                        78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.04E-64372No hitNo description
PROSITE profilePS5015711.0534572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDNELPASGA HSVSLNDLSP RGRCLGPTVA AIPAVDGGYR PGESFACNYC HRRFYSSQAL  60
GGHQNAHKLE RTLAKRSRDI LAAAASPSLS PPPMPAPPAI VFHAAPPERN NNRDDDFLQQ  120
ATPMTPSVVM DMVGWDADTA VTADGGCGRL GLGLGLGHGR NGDDVQLIFK L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G185800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0868804e-53BT086880.2 Zea mays full-length cDNA clone ZM_BFb0022A09 mRNA, complete cds.
GenBankBT0869174e-53BT086917.2 Zea mays full-length cDNA clone ZM_BFb0119B18 mRNA, complete cds.
GenBankBT0871604e-53BT087160.2 Zea mays full-length cDNA clone ZM_BFb0177L16 mRNA, complete cds.
GenBankEU9605224e-53EU960522.1 Zea mays clone 225835 zinc finger protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684518.17e-84uncharacterized protein LOC111258057
TrEMBLA0A368RN484e-78A0A368RN48_SETIT; Uncharacterized protein (Fragment)
STRINGSi032580m5e-62(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.16e-18zinc finger protein 2