PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G184800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GeBP
Protein Properties Length: 271aa    MW: 30896.9 Da    PI: 9.5963
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G184800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57397.51.3e-3026123297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                         +++r+ws eDe+++L +li+++ak+g    +++d++++y ++ +++ ++vs++ql++K+rrLK+K+k  vk+ak++++p++ +ehd++++e
  Sevir.6G184800.1.p  26 RPSRVWSPEDEVTILNALIEYRAKKGRlpASFQDTSDLYLQIFGQLTANVSTTQLSDKVRRLKHKYKLLVKRAKHERDPDLPTEHDHNVYE 116
                         679************************888899********************************************************** PP

              DUF573  91 lskkiWg 97 
                         l++k+W+
  Sevir.6G184800.1.p 117 LCEKVWR 123
                         ******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.6E-2828122IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDVSSRDAAA ASSELRTKHR PGYQKRPSRV WSPEDEVTIL NALIEYRAKK GRLPASFQDT  60
SDLYLQIFGQ LTANVSTTQL SDKVRRLKHK YKLLVKRAKH ERDPDLPTEH DHNVYELCEK  120
VWRLKSLEGG DAESNEEQEI KESDEEMENE REHRERTSKK PKTSRFENAN GNATVTAVRA  180
SHGNGSGRDD AEKGKQMYPY LWAAIEELSK EHPSGPIFRK AFGVLEKAKA RAIEEKLRKF  240
RMSVVRLQLN RMDLTKLSVG MVLDALEGPH *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G184800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702316.20.0probable transcription factor At4g00390
TrEMBLA0A0Q3SVH40.0A0A0Q3SVH4_SETIT; Uncharacterized protein
TrEMBLA0A368RMR50.0A0A368RMR5_SETIT; Uncharacterized protein
STRINGSi013896m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.13e-13DNA-binding storekeeper protein-related transcriptional regulator