PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G184800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GeBP | ||||||||
Protein Properties | Length: 271aa MW: 30896.9 Da PI: 9.5963 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 97.5 | 1.3e-30 | 26 | 123 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 +++r+ws eDe+++L +li+++ak+g +++d++++y ++ +++ ++vs++ql++K+rrLK+K+k vk+ak++++p++ +ehd++++e Sevir.6G184800.1.p 26 RPSRVWSPEDEVTILNALIEYRAKKGRlpASFQDTSDLYLQIFGQLTANVSTTQLSDKVRRLKHKYKLLVKRAKHERDPDLPTEHDHNVYE 116 679************************888899********************************************************** PP DUF573 91 lskkiWg 97 l++k+W+ Sevir.6G184800.1.p 117 LCEKVWR 123 ******7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.6E-28 | 28 | 122 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MDVSSRDAAA ASSELRTKHR PGYQKRPSRV WSPEDEVTIL NALIEYRAKK GRLPASFQDT 60 SDLYLQIFGQ LTANVSTTQL SDKVRRLKHK YKLLVKRAKH ERDPDLPTEH DHNVYELCEK 120 VWRLKSLEGG DAESNEEQEI KESDEEMENE REHRERTSKK PKTSRFENAN GNATVTAVRA 180 SHGNGSGRDD AEKGKQMYPY LWAAIEELSK EHPSGPIFRK AFGVLEKAKA RAIEEKLRKF 240 RMSVVRLQLN RMDLTKLSVG MVLDALEGPH * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G184800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012702316.2 | 0.0 | probable transcription factor At4g00390 | ||||
TrEMBL | A0A0Q3SVH4 | 0.0 | A0A0Q3SVH4_SETIT; Uncharacterized protein | ||||
TrEMBL | A0A368RMR5 | 0.0 | A0A368RMR5_SETIT; Uncharacterized protein | ||||
STRING | Si013896m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2671 | 35 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 3e-13 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G184800.1.p |