PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G170600.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 379aa    MW: 41447.9 Da    PI: 5.9024
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G170600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.35.8e-111366755
                 AP2  7 rwdkkrgrWvAeIrdpse.ng....kr.krfslgkfgtaeeAakaaiaarkkleg 55
                        r+++++gr++A+++d  + +g    k+ k+++lg ++ ++ Aa+a++ a++k++g
  Sevir.6G170600.2.p 13 RRHRWTGRFEAHLWDK-DaRGgsrgKKgKQVYLGAYDDEDAAARAHDLAALKYWG 66
                        899************4.55555887557**********99*************98 PP
2AP247.54.4e-15109160155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I  +     +k+ +lg++ t eeAa a++ a+ + +g
  Sevir.6G170600.2.p 109 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDIAAIEHRG 160
                         89****99**********988422...5**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.6E-16780IPR001471AP2/ERF domain
PROSITE profilePS5103218.558774IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-121275IPR016177DNA-binding domain
PfamPF008476.1E-81366IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-111474IPR001471AP2/ERF domain
CDDcd000186.13E-22109169No hitNo description
SuperFamilySSF541715.95E-17109169IPR016177DNA-binding domain
PfamPF008479.2E-10109159IPR001471AP2/ERF domain
SMARTSM003801.1E-25110174IPR001471AP2/ERF domain
PROSITE profilePS5103217.741110168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-17110168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGVVAHRHRL VWRRHRWTGR FEAHLWDKDA RGGSRGKKGK QVYLGAYDDE DAAARAHDLA  60
ALKYWGPGTV LNFPLCGYDE ELKEMEGQPR EEYIGSLRRR SSGFSRGVSK YRGVARHHHN  120
GRWEARIGRV LGNKYLYLGT YATQEEAAVA YDIAAIEHRG LNAVTNFDIG HYVNHWHRHR  180
RGAGGGDSLG AMDAATPVVV PFQLPDDLPE RPAATGLNGT MGAADLHDGE DQMPHHACSF  240
LGDGAQLADQ VGPPAHHAAP TPSALDLLLQ SPKFKEMMEQ VSEAAAMADG NSSSSAAETS  300
WASSSSSSPP QPLSPQRQPE ISGGSTPARC SFPDDVQTFF DFENETDMGF TYAEVDTFLF  360
GDLGEYAAPM FQYCELDV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1615RHRLVWRRHR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G170600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973570.10.0AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A368RM590.0A0A368RM59_SETIT; Uncharacterized protein
STRINGSi013842m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-61AP2 family protein