PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G170600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | AP2 | ||||||||
Protein Properties | Length: 379aa MW: 41447.9 Da PI: 5.9024 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.3 | 5.8e-11 | 13 | 66 | 7 | 55 |
AP2 7 rwdkkrgrWvAeIrdpse.ng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 r+++++gr++A+++d + +g k+ k+++lg ++ ++ Aa+a++ a++k++g Sevir.6G170600.2.p 13 RRHRWTGRFEAHLWDK-DaRGgsrgKKgKQVYLGAYDDEDAAARAHDLAALKYWG 66 899************4.55555887557**********99*************98 PP | |||||||
2 | AP2 | 47.5 | 4.4e-15 | 109 | 160 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + +k+ +lg++ t eeAa a++ a+ + +g Sevir.6G170600.2.p 109 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDIAAIEHRG 160 89****99**********988422...5**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.6E-16 | 7 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.558 | 7 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-12 | 12 | 75 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.1E-8 | 13 | 66 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-11 | 14 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.13E-22 | 109 | 169 | No hit | No description |
SuperFamily | SSF54171 | 5.95E-17 | 109 | 169 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.2E-10 | 109 | 159 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-25 | 110 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.741 | 110 | 168 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-17 | 110 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MGVVAHRHRL VWRRHRWTGR FEAHLWDKDA RGGSRGKKGK QVYLGAYDDE DAAARAHDLA 60 ALKYWGPGTV LNFPLCGYDE ELKEMEGQPR EEYIGSLRRR SSGFSRGVSK YRGVARHHHN 120 GRWEARIGRV LGNKYLYLGT YATQEEAAVA YDIAAIEHRG LNAVTNFDIG HYVNHWHRHR 180 RGAGGGDSLG AMDAATPVVV PFQLPDDLPE RPAATGLNGT MGAADLHDGE DQMPHHACSF 240 LGDGAQLADQ VGPPAHHAAP TPSALDLLLQ SPKFKEMMEQ VSEAAAMADG NSSSSAAETS 300 WASSSSSSPP QPLSPQRQPE ISGGSTPARC SFPDDVQTFF DFENETDMGF TYAEVDTFLF 360 GDLGEYAAPM FQYCELDV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 15 | RHRLVWRRHR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G170600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973570.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A368RM59 | 0.0 | A0A368RM59_SETIT; Uncharacterized protein | ||||
STRING | Si013842m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 1e-61 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G170600.2.p |