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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sevir.6G170600.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
AP2 |
| Protein Properties |
Length: 415aa MW: 45195.9 Da PI: 6.4101 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.6G170600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 45.9 | 1.4e-14 | 44 | 102 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ng....kr.krfslgkfgtaeeAakaaiaarkkleg 55
y+GV++++++gr++A+++d + +g k+ k+++lg ++ ++ Aa+a++ a++k++g
Sevir.6G170600.1.p 44 AYRGVTRHRWTGRFEAHLWDK-DaRGgsrgKKgKQVYLGAYDDEDAAARAHDLAALKYWG 102
69******************4.55555887557**********99*************98 PP
|
| 2 | AP2 | 47.3 | 5e-15 | 145 | 196 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV +++ +grW+A+I + +k+ +lg++ t eeAa a++ a+ + +g
Sevir.6G170600.1.p 145 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDIAAIEHRG 196
89****99**********988422...5**********************99887 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 415 aa
Download sequence Send
to blast |
MAKPRARRNA APDEDPNAAT GVRVTKRARR KSGPRESPSQ RSSAYRGVTR HRWTGRFEAH 60
LWDKDARGGS RGKKGKQVYL GAYDDEDAAA RAHDLAALKY WGPGTVLNFP LCGYDEELKE 120
MEGQPREEYI GSLRRRSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVLGNK YLYLGTYATQ 180
EEAAVAYDIA AIEHRGLNAV TNFDIGHYVN HWHRHRRGAG GGDSLGAMDA ATPVVVPFQL 240
PDDLPERPAA TGLNGTMGAA DLHDGEDQMP HHACSFLGDG AQLADQVGPP AHHAAPTPSA 300
LDLLLQSPKF KEMMEQVSEA AAMADGNSSS SAAETSWASS SSSSPPQPLS PQRQPEISGG 360
STPARCSFPD DVQTFFDFEN ETDMGFTYAE VDTFLFGDLG EYAAPMFQYC ELDV*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT069847 | 1e-180 | BT069847.1 Zea mays full-length cDNA clone ZM_BFb0304K10 mRNA, complete cds. |
| GenBank | KJ728211 | 1e-180 | KJ728211.1 Zea mays clone pUT6488 AP2-EREBP transcription factor (EREB60) mRNA, partial cds. |
