PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G166400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ZF-HD | ||||||||
Protein Properties | Length: 120aa MW: 12269 Da PI: 8.2912 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 86.8 | 2.2e-27 | 31 | 83 | 3 | 56 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 +vrY eC++NhAas+GghavDGC+Ef+++ geegt+aal+CaACgCHR+FHRr Sevir.6G166400.1.p 31 GVRYGECRRNHAASMGGHAVDGCREFLAE-GEEGTTAALRCAACGCHRSFHRRV 83 68**************************8.999*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-17 | 2 | 80 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.1E-28 | 32 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.5E-24 | 33 | 82 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.645 | 34 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MKRMVILRRC HPPPPPEALL AGGCCGGGGG GVRYGECRRN HAASMGGHAV DGCREFLAEG 60 EEGTTAALRC AACGCHRSFH RRVRCCCCLC CGAGAAARWG GGDDGRCSPE SSASSTTPR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G166400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065618 | 1e-67 | BT065618.1 Zea mays full-length cDNA clone ZM_BFb0349A13 mRNA, complete cds. | |||
GenBank | EU971969 | 1e-67 | EU971969.1 Zea mays clone 372958 mini zinc finger 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973532.1 | 6e-47 | mini zinc finger protein 4-like | ||||
Swissprot | Q0J5F8 | 2e-33 | MIF4_ORYSJ; Mini zinc finger protein 4 | ||||
TrEMBL | A0A368RMB8 | 1e-45 | A0A368RMB8_SETIT; Uncharacterized protein | ||||
STRING | GRMZM2G370863_P01 | 6e-36 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1431 | 34 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 4e-24 | mini zinc finger 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G166400.1.p |
Publications ? help Back to Top | |||
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