PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB

Protein Properties

Length: 291aa MW: 30825.7 Da PI: 9.6539

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.6G166200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	8e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +v+ G+g+W++++ g+ R+ k+c++rw +yl Sevir.6G166200.1.p 14 KGPWTPEEDLVLVSYVQDNGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	48.5	2e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++l++++ ++lG++ W++Ia++++ Rt++++k++w+++l Sevir.6G166200.1.p 67 RGNFSVQEEKLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-22	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.882	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.15E-29	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-11	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	4.63E-10	16	61	No hit	No description
PROSITE profile	PS51294	24.2	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.9E-24	65	116	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	9.59E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MGRPPCCEKT GVKKGPWTPE EDLVLVSYVQ DNGPGNWRAV PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF SVQEEKLIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLSKAG 120 AAEAKSGRSA AAKGQWERRL QTDIHTARQA LRDALSLDPM LPPAKTEPLP LPPAPAPASQ 180 AAYASSTQNI ARLLEDFMRP RAGSGSGGKA SSGSRSSASA VSGGEGAASA SHSGSGTTRT 240 PEGSTGTSKA EDAGPAPPFS MLESWLLDDG MGHGDAGLMG VPLSDPCQFF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-24	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	3e-24	12	116	25	128	MYB TRANSFORMING PROTEIN
1mse_C	2e-24	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	2e-24	14	116	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.6G166200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT837778	1e-119	CT837778.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K22, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973531.1	0.0	myb-related protein 306
Swissprot	P81392	1e-99	MYB06_ANTMA; Myb-related protein 306
TrEMBL	K3YIW4	0.0	K3YIW4_SETIT; Uncharacterized protein
STRING	Si014183m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62470.2	4e-82	myb domain protein 96

Link Out ? help Back to Top
Phytozome	Sevir.6G166200.1.p

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]