PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G144800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 431aa    MW: 44414.3 Da    PI: 5.6161
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G144800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.91.9e-111149341
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                        i n + r  t+ +Rr+g+ K A ELSvLC+++va+++++
  Sevir.6G144800.1.p 11 IPNRRARGDTLRQRRKGLRKMARELSVLCGVDVALVVAA 49
                        668888999***************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-5160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.334149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-13183IPR002100Transcription factor, MADS-box
PfamPF003196.8E-121148IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGRRRASTGL IPNRRARGDT LRQRRKGLRK MARELSVLCG VDVALVVAAA AADGGGGAGP  60
ADVWESREGV LARYRALAPE ARARHVHRAY LEGELGKEEA KLARVRQGGP GGLQGWEDRA  120
LDGVATAGEA RGLLEAIDAA ILAADGRRRA LGVPADDDGG AGVVIEGIAP QLLNSAAGVV  180
DGDCYVPHHG PGGFDDADGQ FIWGIDGGFQ PCGAADMQPG GYGFRQCGTT IGAATEGCHL  240
QMAPGMYGNS NSHLADACPY QLPRHAQPNL APTWSAADEP RHAMVPVEYY YPSDTGLSYN  300
YTVDTQAAAN ASQGNGGWSF ATGASGNFLN SPAPPALSLA MATGGGGGGG NFVDAPPAPA  360
ALAHTTGRAG DNFAITCAAP AQPLAMSYGG DLRDAGWYAE QWQWQAAPEP QRDGGGGRQP  420
VERLSSLYSM *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G144800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815545.11e-118developmental protein SEPALLATA 3-like
TrEMBLA0A368R5L81e-124A0A368R5L8_SETIT; Uncharacterized protein
STRINGSi003942m1e-120(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960