PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G118400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 291aa    MW: 31909.7 Da    PI: 5.8807
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G118400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.16.1e-082312642154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp++e++++L +++gL+ +q+ +WF N+R +
  Sevir.6G118400.1.p 231 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 264
                         469*****************************87 PP
2ELK271.1e-09185206122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELKh+L+++Y+++L+++++E++
  Sevir.6G118400.1.p 185 ELKHELKQGYKEKLIDIREEIL 206
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.5E-191963IPR005540KNOX1
PfamPF037905.8E-172162IPR005540KNOX1
SMARTSM012565.1E-2772128IPR005541KNOX2
PfamPF037919.7E-1980127IPR005541KNOX2
PROSITE profilePS5121310.039185205IPR005539ELK domain
SMARTSM011880.004185206IPR005539ELK domain
PROSITE profilePS5007111.742205268IPR001356Homeobox domain
SMARTSM003895.1E-11207272IPR001356Homeobox domain
SuperFamilySSF466892.65E-16207271IPR009057Homeodomain-like
CDDcd000863.44E-12208269No hitNo description
Gene3DG3DSA:1.10.10.602.7E-25212269IPR009057Homeodomain-like
PfamPF059207.0E-18225264IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGAGVVAAGG AEEPEADAAR CKAEVLAHPL YEQLLSAHVA CLRIATPVDQ LPRIDAQLAQ  60
SQGVVVKYSG LATAAAGDDG RELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWELE  120
QNLQSLTGAS PGEGTGATMS DGEDDQAGSE GNIYDPGLDS PDTMGFGPLV PTESERSLME  180
RVRQELKHEL KQGYKEKLID IREEILRKRR AGKLPGDTTS TLKAWWQSHS KWPYPTEEDK  240
ARLVQETGLQ LKQINNWFIN QRKRNWHSNP SSSSTNAKSK RKSNAGDGNS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12208272872Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G118400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973169.10.0homeobox protein knotted-1-like 13 isoform X1
SwissprotQ0J6N40.0KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA0A368RKC70.0A0A368RKC7_SETIT; Uncharacterized protein
STRINGOPUNC08G08730.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-154KNOTTED1-like homeobox gene 3