PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G113700.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 568aa    MW: 61247.5 Da    PI: 6.408
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G113700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.11e-29249305259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg+nWrKYGqK+vk+se++rsYYrCt +gC++kkkve++  d++vvei+Y+g Hnh+
  Sevir.6G113700.2.p 249 ADGFNWRKYGQKQVKSSENSRSYYRCTNSGCSAKKKVEHCP-DGRVVEIIYRGAHNHD 305
                         7****************************************.***************7 PP
2WRKY100.59.9e-32417474259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++ +d + +++tYeg+Hnh+
  Sevir.6G113700.2.p 417 SDGYRWRKYGQKIVKGNPNPRSYYRCTHGGCPVRKHVEKAPDDVNNIVVTYEGKHNHD 474
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.779243307IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.0E-27244307IPR003657WRKY domain
SuperFamilySSF1182901.7E-23245307IPR003657WRKY domain
SMARTSM007745.7E-33248306IPR003657WRKY domain
PfamPF031066.2E-23250305IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-31410476IPR003657WRKY domain
PROSITE profilePS5081132.948411476IPR003657WRKY domain
SuperFamilySSF1182902.35E-27411476IPR003657WRKY domain
SMARTSM007741.2E-35416475IPR003657WRKY domain
PfamPF031061.5E-25418474IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MADSDPEPAP ADDKCPAPAA AVEVEEARPP PPEGTAEVKL PSQEASAAEV ETRPPPEAPG  60
ATPTEDSEKE AEAKPKEGKK GEKEMGDETK EKRLEEDKGK GAKQDKEETK EKEKVDAKGK  120
VLAVVKVEGT EKEVKATRRP AGASAETPIL AVPVVAVPCF IAPPGFAFAM THQAALASVT  180
AHAQMHMQSP TTSGCSEAPS SPFYITPRSI VPLQQSPSVA EGNVCRQLAD KPFSSEPKSP  240
HHAVVNMVAD GFNWRKYGQK QVKSSENSRS YYRCTNSGCS AKKKVEHCPD GRVVEIIYRG  300
AHNHDPPPKT RFAKEKVTPI GVPSGGETLR LVNTEILESS APTTYKLDHS SVSETSEQQL  360
FCSSDCEGDA GNKSEDEHPS AEPLPKRRVI ETTAPNLTPV LRTVREQKII VQAGKMSDGY  420
RWRKYGQKIV KGNPNPRSYY RCTHGGCPVR KHVEKAPDDV NNIVVTYEGK HNHDEPFRSN  480
SIPVSAISQP VAAIEQPSTS ITTADERPPT ITQKDANGVS DKETTLEFGG EKALESAQTL  540
LSIKTNSDDM KNSVLKETSA AVPVQNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-252454761477Probable WRKY transcription factor 4
2lex_A2e-252454761477Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G113700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973142.10.0probable WRKY transcription factor 32
TrEMBLK3YGX00.0K3YGX0_SETIT; Uncharacterized protein
STRINGSi013488m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.12e-67WRKY DNA-binding protein 4