PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G113700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 570aa    MW: 61432.7 Da    PI: 6.408
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G113700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.11e-29251307259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg+nWrKYGqK+vk+se++rsYYrCt +gC++kkkve++  d++vvei+Y+g Hnh+
  Sevir.6G113700.1.p 251 ADGFNWRKYGQKQVKSSENSRSYYRCTNSGCSAKKKVEHCP-DGRVVEIIYRGAHNHD 307
                         7****************************************.***************7 PP
2WRKY100.51e-31419476259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++ +d + +++tYeg+Hnh+
  Sevir.6G113700.1.p 419 SDGYRWRKYGQKIVKGNPNPRSYYRCTHGGCPVRKHVEKAPDDVNNIVVTYEGKHNHD 476
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.779245309IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-27246309IPR003657WRKY domain
SuperFamilySSF1182901.7E-23247309IPR003657WRKY domain
SMARTSM007745.7E-33250308IPR003657WRKY domain
PfamPF031066.2E-23252307IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-31412478IPR003657WRKY domain
SuperFamilySSF1182902.35E-27413478IPR003657WRKY domain
PROSITE profilePS5081132.948413478IPR003657WRKY domain
SMARTSM007741.2E-35418477IPR003657WRKY domain
PfamPF031061.5E-25420476IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MADSDPEPAP ADDKCPAPAA AVEVEEARPP PPEGTAEVKL PSQEASAAEV ETRPPPEAPG  60
ATPTEDSEKE AEAKPKEGKK GEKEMGDETK EKRLEEDKGK GAKQDKEETK EKEKVDAKGK  120
VLAVVKVEGT EKEVKATRRP AGASAETPIL AVPVVAVPCF IAPPGFAGQF AMTHQAALAS  180
VTAHAQMHMQ SPTTSGCSEA PSSPFYITPR SIVPLQQSPS VAEGNVCRQL ADKPFSSEPK  240
SPHHAVVNMV ADGFNWRKYG QKQVKSSENS RSYYRCTNSG CSAKKKVEHC PDGRVVEIIY  300
RGAHNHDPPP KTRFAKEKVT PIGVPSGGET LRLVNTEILE SSAPTTYKLD HSSVSETSEQ  360
QLFCSSDCEG DAGNKSEDEH PSAEPLPKRR VIETTAPNLT PVLRTVREQK IIVQAGKMSD  420
GYRWRKYGQK IVKGNPNPRS YYRCTHGGCP VRKHVEKAPD DVNNIVVTYE GKHNHDEPFR  480
SNSIPVSAIS QPVAAIEQPS TSITTADERP PTITQKDANG VSDKETTLEF GGEKALESAQ  540
TLLSIKTNSD DMKNSVLKET SAAVPVQNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-252474781477Probable WRKY transcription factor 4
2lex_A2e-252474781477Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G113700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973142.10.0probable WRKY transcription factor 32
TrEMBLK3YGX00.0K3YGX0_SETIT; Uncharacterized protein
STRINGSi013488m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.26e-68WRKY DNA-binding protein 4