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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G068300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 249aa MW: 26926.5 Da PI: 5.4417 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31 | 4.4e-10 | 81 | 129 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ rE++RRd++N++f eL + l + + K +Ka+iL A++ + +L Sevir.6G068300.1.p 81 TSKASREKQRRDKLNDRFLELGSTLEPG---KPIKADKAAILSDATRMVIQL 129 67889**********************9...8999***********988777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-13 | 75 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.671 | 78 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.47E-8 | 79 | 134 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-12 | 81 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-7 | 82 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-8 | 84 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MSLPPAPAEG GGGGSAGDDW FLDCGILDDL PAAACGAFPW DASPSSSNPS VEVGSYVNTN 60 DVFKEPGSNK RLRSGSSGRP TSKASREKQR RDKLNDRFLE LGSTLEPGKP IKADKAAILS 120 DATRMVIQLR SEAQQLKDTN GSLEEKIKEL KAEKDELRDE KQKLKLEKES LEHQMKLMTS 180 APAYMPHPTL MPAPFPQAPL APFHPQGQAA GQKLMMPFVS YPGYPMWQFM PPSEVDTSKD 240 SEACPPVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G068300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821110.1 | 1e-170 | transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 2e-72 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A3L6RLZ1 | 1e-171 | A0A3L6RLZ1_PANMI; Transcription factor ILR3 | ||||
STRING | Si014339m | 1e-169 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 7e-50 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G068300.1.p |