PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sevir.6G032900.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NF-YC

Protein Properties

Length: 115aa MW: 13310.6 Da PI: 4.4955

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.6G032900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	35.6	2.1e-11	16	49	55	88
NF-YC 55 ileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 + eltlr+wlhaee krrtl+k d++aa++ t+i Sevir.6G032900.1.p 16 LQELTLRAWLHAEEDKRRTLQKKDVTAALAGTEI 49 569*************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.1E-7	15	43	IPR009072	Histone-fold
SuperFamily	SSF47113	2.3E-7	16	47	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MKHWQLQPHQ QAPPLLQELT LRAWLHAEED KRRTLQKKDV TAALAGTEIA SGPSEKPKGE 60 ATATVQEDDD PYRDYYWDDY SPPWSPDESP SPDLRNVTCD DPRYYTYIHD YYSL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	37	RRTLQKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.6G032900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321034.1	6e-25	nuclear transcription factor Y subunit C-3
TrEMBL	A0A368RHN1	1e-66	A0A368RHN1_SETIT; Uncharacterized protein
STRING	Pavir.Fa02054.1.p	6e-49	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19726	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	3e-10	nuclear factor Y, subunit C4

Link Out ? help Back to Top
Phytozome	Sevir.6G032900.1.p