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Plant Transcription
Factor Database
|
Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sevir.5G463200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
SRS |
| Protein Properties |
Length: 362aa MW: 36887.7 Da PI: 8.0263 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.5G463200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 220.5 | 3.4e-68 | 121 | 288 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkqsa 85
+sg+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerq+ +a+ s++++ ++ +++ask++r ++q++
Sevir.5G463200.1.p 121 GSGATTCQDCGNQAKKDCGHNRCRTCCKSRGFDCSTHVKSTWVPAARRRERQHLAASGSASSSPATasaaavaSASASKKPRL--LSSQTT 209
57889**********************************************99887765444333334667555556666665..589999 PP
DUF702 86 lsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+s+t++s+a+++++++t+s lP++v+++avf+cvrv+s++dge+e+aYq+ v+i+Gh+fkG+LydqG+++
Sevir.5G463200.1.p 210 TSHTSTSNATTPRSFDTTSshqdasfrdsLPRQVRAPAVFKCVRVTSIEDGEDEYAYQAMVTINGHLFKGFLYDQGPDD 288
99**************99999********************************************************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 362 aa
Download sequence Send
to blast |
MRQAAALNYG MADVGMVVVA PAASFHHTHH HHHHHEAAAA AAAAAGDPIF PLLSGGPCVL 60
DPDAAKSGSG APPGSAAIQF WQPQPQSPSS AAAANPNPSA SPFAYLKKPL PMLDTGAGSS 120
GSGATTCQDC GNQAKKDCGH NRCRTCCKSR GFDCSTHVKS TWVPAARRRE RQHLAASGSA 180
SSSPATASAA AVASASASKK PRLLSSQTTT SHTSTSNATT PRSFDTTSSH QDASFRDSLP 240
RQVRAPAVFK CVRVTSIEDG EDEYAYQAMV TINGHLFKGF LYDQGPDDGR HAATSNEDST 300
AGVPNISELH LGAASASGAG GTGGVREGGA SMGPTELYGG GGQHHILGGS SYVPPAQIVR 360
L*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ858781 | 0.0 | HQ858781.1 Zea mays clone UT1767 SRS transcription factor mRNA, partial cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 1e-54 | Lateral root primordium (LRP) protein-related |
