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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.5G444300.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
Trihelix |
Protein Properties |
Length: 264aa MW: 28331.8 Da PI: 7.8767 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.5G444300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 49.4 | 1.2e-15 | 13 | 57 | 28 | 72 |
trihelix 28 kplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72
p+W++vs+++r++g+er+p qC+++w nl+++ kki ++e+k +
Sevir.5G444300.1.p 13 RPKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEGKAA 57
69***************************************9975 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 264 aa
Download sequence Send
to blast |
MERRALQLPV RPRPKWAAVS AYCRRHGVER GPMQCRKRWG NLSWDLKKIV AWEGKAAAGD 60 GAGAALPPPQ QHESFWDMRG EQRRARQLPS SFDREVYDAL VCGTPAVAED AAAALPNFGD 120 GELEGVYRQP PIMVMPISAR KYEPPPASSE HECSGPVTES DKKAGAAASD KNSTSQHDGG 180 GGYKDSDATF VAGEAEGTTT ATPAATVSIG KQVIEALERG NRALEQQLEA QKCSWRADRE 240 QRAALLGALD RLAGAVGRIA DKL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ728031 | 1e-152 | KJ728031.1 Zea mays clone pUT6171 trihelix transcription factor (THX11) mRNA, complete cds. |