PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.5G438400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 390aa MW: 40408.9 Da PI: 9.2107 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.3 | 3.9e-42 | 99 | 175 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C vegC+adls+ ++yhrrhkvCe+hsk+pvv+v+g++qrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ Sevir.5G438400.1.p 99 CSVEGCAADLSKGRDYHRRHKVCEAHSKTPVVTVAGQQQRFCQQCSRFHSLGEFDDTKRSCRKRLDGHNRRRRKPQP 175 **************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-34 | 91 | 160 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.898 | 96 | 173 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-39 | 97 | 178 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-31 | 99 | 172 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 390 aa Download sequence Send to blast |
MDWDAKMLPA WDLGTVVGPS SGGGGGVVAA AGGGGGGGGG GALDLKLGGP TSWRAASTTT 60 AAAAPLPFPP APPPRASSSS SAPAKRARPG QAQQAVPACS VEGCAADLSK GRDYHRRHKV 120 CEAHSKTPVV TVAGQQQRFC QQCSRFHSLG EFDDTKRSCR KRLDGHNRRR RKPQPDPLNP 180 GGLFANHHGV TRFAAYPQLF ASSLADPKWP VVKTEADVFQ DQYYPAVHLN GAGSLFHGKD 240 RKHFPFLTNH HHGGESAGAF GSQPFTITTA SSESCSKQSN GNCALSLLSD NPTPAQTAMI 300 PTAQPLGATL QYGGAARVPD GGDVSLAGMS YVRLGDSKQA SILTTSTSHT TVASPGPATQ 360 LQYYYHVSGG DQGNSPDGAA IQAIPYSSW* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-30 | 99 | 172 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 155 | 172 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.5G438400.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK356077 | 1e-110 | AK356077.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1029L02. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971091.1 | 0.0 | squamosa promoter-binding-like protein 2 | ||||
Swissprot | Q0JGI1 | 1e-120 | SPL2_ORYSJ; Squamosa promoter-binding-like protein 2 | ||||
TrEMBL | K3XIT1 | 0.0 | K3XIT1_SETIT; Uncharacterized protein | ||||
STRING | Si001804m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10456 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50670.1 | 4e-32 | SBP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.5G438400.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|