PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G429800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 328aa    MW: 34850.3 Da    PI: 4.9488
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G429800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.53.5e-0830611344
                        HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstg 44
                        f++R+  + KKA EL + C+++vavi  ++ g
  Sevir.5G429800.1.p 30 FARRKDVVRKKADELATRCAIDVAVICTGPGG 61
                        899*************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.19E-112798IPR002100Transcription factor, MADS-box
PfamPF003197.2E-72861IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSRRGEGAMN RGKVGPTRAT ASPRDLLAKF ARRKDVVRKK ADELATRCAI DVAVICTGPG  60
GAGDLDCWPS KEAASEVLRR YSALAPAHRA RHTEDLAALV ARQLAEERDK LVRAREGGVA  120
LALGSRDGSL EGLSEDKLRE LLAAIEGSQV DAKNRILMLQ APLGGAVDHA TLSRGLVHED  180
EATQEDSVSA TDNGVPPRGE AAAGGGGLGP PPSKNPNSPN AAMPVGKEIV AENIVTAKYD  240
GGEVQILQPP GDADAEWMRG LVDDLKKRPQ PYDPAAYAAN VGWFVMERDA YDSIRFDLAM  300
PPPCIAPMDD DGEPLKLWSW ENTMPPP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G429800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819832.11e-134uncharacterized protein LOC112896014
TrEMBLA0A368RES10.0A0A368RES1_SETIT; Uncharacterized protein
STRINGSi004941m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1587778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.12e-09AGAMOUS-like 103