PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.5G427700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 294aa MW: 31450.3 Da PI: 4.518 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00046 | 268 | 291 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ C+k+F + L++H + H Sevir.5G427700.1.p 268 HACKSCSKTFGSDKALESHKKAkH 291 67*****************99877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.3E-5 | 268 | 292 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.512 | 268 | 293 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 270 | 291 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 294 aa Download sequence Send to blast |
MEFWGEEVKP GAKVSCRADE GYVIHLSQAA LGETKKGSEN VVVSIQVDDK KLVLGTLSVD 60 KHPQIMCDLI FEDDFEISHS SKTASVFLCG YKSPIPIFEP DSGDDEISSD EELETEDIPI 120 KNDEIKKSGA NVPVKNVKNV KQDDDEETSS GDDGFTDDSD DSEMSEDSDE ETSSGADLTG 180 DSEDETDDSE EQTPTPKKPE VVGKKRATEA VASSGKKAKV EPSGDKKGVH VSTPHPAKQA 240 SKTPAEKSGK TPATDKKSKD KSPKSGSHAC KSCSKTFGSD KALESHKKAK HEA* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.5G427700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970994.1 | 0.0 | histone deacetylase HDT2 isoform X2 | ||||
TrEMBL | A0A368REV5 | 0.0 | A0A368REV5_SETIT; Uncharacterized protein | ||||
STRING | Si004270m | 1e-175 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2204 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G44750.2 | 6e-28 | histone deacetylase 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.5G427700.1.p |