PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G427500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 823aa    MW: 89447.9 Da    PI: 6.6653
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G427500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017795818123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         y+C+ C+k+F ++  L +H ++ H
  Sevir.5G427500.1.p 795 YSCKSCSKTFYSSVALDTHRKVkH 818
                         99******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.02156190IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.566192222IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0029196228IPR002885Pentatricopeptide repeat
PfamPF130412.1E-7196241IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.104228262IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.3E-5230263IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.6263297IPR002885Pentatricopeptide repeat
PfamPF130413.1E-9264311IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.5E-6265296IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.131298332IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.684333367IPR002885Pentatricopeptide repeat
PfamPF015350.46340364IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.462370404IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.0E-4376406IPR002885Pentatricopeptide repeat
PfamPF015350.63376402IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.67405439IPR002885Pentatricopeptide repeat
PROSITE profilePS5015712.009795822IPR007087Zinc finger, C2H2
PROSITE patternPS000280797818IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MAASRRLARK LPSLISRHQR LISPEIEAAE LTESPTISAS IPLDPSLPVL PLAVSHLSPP  60
SPLPALPSAH ASSPASLLRL LRRARHHPQL AALDLHILLA AADASPAFRP DHGLTSLLAA  120
RLAASRRLPS LRRLLDLVLA RPCPCADDSI FACPELLPTF RKAIVAFAAS GDIPAASEAL  180
ASLRRAADSP LPAEFYNIIL HALSRLRRHV DVIRFYGEMT SVYRVAPDAY TFNILINSSC  240
RAEGVNTAMR WFGEMQRRSC APTGVSFNTL MRGFIREGRY KEGIKVAREM LELGVGLSVV  300
SMEILISGLC RGGEALKAAE VFVEFWGDGV VPERFDCFEL VEALCRVGKI DKAVEVVDMV  360
LERNMKCCLS VPAGVTVLEC LMKAGKLDKV CQLMWRMIDQ GIVPDTITCN CVFEALCEAG  420
RAADANQLRV LAKEQGFVAD GETYRMLNSQ SQTPSHSGQR SPSHSSLFLF PFLPPLPSNS  480
RLQAAAPQNP LPLPKQRGGE KPLGVPGRVV PPPQAMDFAS CKHWGVLVRP GETVKCNPGE  540
VYCHVSQIAL QDDKGNEDVR VFVKVGGNEI LVGTLSVDKY PQCMIGLVFE KEFELRHTSK  600
NSNISALGYK FCETKSYSDT STDDDDDSDE EVPLAIPLYP NADDDRSKQT KSGVDNPAST  660
QLCKPKNTLE ETKDPEKQKG DVGGTDDDHS DENSVHSEEG ESGDDEDSSD EDDSDSSDED  720
DGEDTPKNIM GKNRPAETPL KTPLKKAKIA TPSMGNKTGS GSTKRSGYVH VATPYPKQVK  780
KTPSIIDSSK QSAGYSCKSC SKTFYSSVAL DTHRKVKHNA HK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9h_A2e-4016644711420pentatricopeptide repeat protein dPPR-U8G2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G427500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970992.10.0pentatricopeptide repeat-containing protein At2g36240
RefseqXP_004970993.10.0pentatricopeptide repeat-containing protein At2g36240
RefseqXP_022682079.10.0pentatricopeptide repeat-containing protein At2g36240
RefseqXP_022682080.10.0pentatricopeptide repeat-containing protein At2g36240
TrEMBLK3XH520.0K3XH52_SETIT; Uncharacterized protein
STRINGSi001224m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64100.23e-23pentatricopeptide (PPR) repeat-containing protein