PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G426200.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 972aa    MW: 107629 Da    PI: 8.8192
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G426200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001937963123
                         EEET..TTTEEESSHHHHHHHHHH..T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                         y+Cp   Cg++F+  s++ rH r+  H
  Sevir.5G426200.2.p 937 YVCPepECGQTFRFVSDFSRHKRRtgH 963
                         99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.6E-4852876IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035515854876IPR015880Zinc finger, C2H2-like
SMARTSM003555.5877901IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.907877906IPR007087Zinc finger, C2H2
PROSITE patternPS000280879901IPR007087Zinc finger, C2H2
SuperFamilySSF576672.98E-14888941No hitNo description
Gene3DG3DSA:3.30.160.601.2E-9905931IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.7E-4907931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.718907936IPR007087Zinc finger, C2H2
PROSITE patternPS000280909931IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-10932959IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.74937963IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.845937968IPR007087Zinc finger, C2H2
PROSITE patternPS000280939963IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 972 aa     Download sequence    Send to blast
MVSHYQLLYE LALSMCLRDP SGGAMEPRSS RLKEKKKGEG EQLVKKIFVR NVIEDNKLLN  60
HFLSDGSSCI ILPTSPNNGS ALSTLLSKSQ STTSRVSDVQ CSSTETPKDS GHLPMNGALG  120
KNGELSSSKE ISASVCSGKE VPPTACMHDC VNMPGSLDAN NAESDKGDVN NADGILDQGL  180
LSCVTCGILS FSCVAVIKPR ECAAKWLMSA DSSLINKQLA GSGESHLIDA LQGSDFEMNR  240
NRIISDAASL DRNSALDLLA SAYGDASDSD EDVLNKKIQA SNVSNELISH TIESPPNTSS  300
NGGCDGTNMS SSSKERQQGP SSQSSQCIGN TNNGPKGVRT RNKYQLKMVL SEGFLPKDIY  360
SEMQKKVQCE PSRSNMTSTE PIHGTDCQAS RNSATVCMDG NRSTTTTVDN LATSIVKPDK  420
DSSRMHVFCL EHAIEVEKQL RTIGGAHIFL LCRPEYPKIE VEAKLLAEEM EVKYDWKDIV  480
FKEASIEDRK KIQEVVQDEE TIPTHSDWAV KLGINLYYSA NLAKSPLYNK QLPYNRVIYK  540
AFGCSSPNNS PAKLKTYARR QGRAKKIVLA GRWCGKVWMS NQVHPFLAHR IESHEPEEID  600
EIWSSYEKSN ADHVEHSSRE ATSPRKSSSR AIEEKTSNRE KEPLEKASIK KPKYIEEDNS  660
EALESAEKAS AGKSNCRTSV EKMGKRKKEL AEKANTKKLK HTEEDNSKAL TGASEASPPL  720
PSGMVVRSSS RIANRKNMLK SKMEEEDNGP ASHPKAKVEE DSNDPAICSS ARSLRQNINV  780
KKQTKKSRAE KRKAPSSAAL KDEEQISDVK GFSVTKQQLS SHKQKNKVEE TQQMKKTRER  840
KGAPPSSPKH GEEYACDIEG CSMSFGTKQE LSLHKRDICP VQGCRRKFFS HKYLLQHRKV  900
HNDDRPLKCS WKGCDMAFKW PWARTEHMRV HTGDRPYVCP EPECGQTFRF VSDFSRHKRR  960
TGHAAKVKAK K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-5985496623135Lysine-specific demethylase REF6
6a58_A3e-5985496623135Lysine-specific demethylase REF6
6a59_A3e-5985496623135Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1684699KRKKELAEKANTKKLK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G426200.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970976.10.0lysine-specific demethylase JMJ705
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A368REM80.0A0A368REM8_SETIT; Uncharacterized protein
STRINGSi000062m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.13e-58relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]