 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.5G413400.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
NAC |
| Protein Properties |
Length: 410aa MW: 43884 Da PI: 9.1316 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.5G413400.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 160.2 | 8.4e-50 | 43 | 168 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
+pGfrFhPt+eel+ +yL++kvegk+++l e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ +
Sevir.5G413400.1.p 43 MPGFRFHPTEEELIEFYLRRKVEGKRFNL-ELITFLDLYRYDPWELPAMASIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMI 132
79**************************9.89***************888889************************************** PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++++ +glkktLvfy+g+apkg++++W+m+eyrl
Sevir.5G413400.1.p 133 RAENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 168
**********************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 410 aa
Download sequence Send
to blast |
MSGRHENGHG AAATAAAAAA AVGGGGRAGE GGGGDAHEDD LVMPGFRFHP TEEELIEFYL 60
RRKVEGKRFN LELITFLDLY RYDPWELPAM ASIGEKEWFF YVPRDRKYRN GDRPNRVTAS 120
GYWKATGADR MIRAENNRPI GLKKTLVFYS GKAPKGVRSS WIMNEYRLPP DHTDRYQKTE 180
ISLCRVYKRT GIDDGHGHPS ARSTPSRRAT AQQDIKQASS SSTPTPPTSP PKMMQLLHGE 240
CTSAPTIRDH AAAHNDNKPP PPAAAQRQLP TKPCNGGYLL STASSAAGAS DHLQVGAAAT 300
PPSSYDQSRN ANAFASTYSL LSLVNAASMG GGSAAAAIDE LSSLVGHGPP AYFNHQAGGS 360
FLPLPTPSSS QPMALGTLPM SLAAISDKIW DWNTIPDAAA RDYSSASFK*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-54 | 44 | 189 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-54 | 44 | 189 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-54 | 44 | 189 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-54 | 44 | 189 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 3e-54 | 44 | 189 | 19 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 3e-54 | 44 | 189 | 19 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT039864 | 0.0 | BT039864.1 Zea mays full-length cDNA clone ZM_BFc0047I12 mRNA, complete cds. |
| GenBank | EU957131 | 0.0 | EU957131.1 Zea mays clone 1583712 hypothetical protein mRNA, complete cds. |
