 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sevir.5G408300.10.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
Family |
NAC |
Protein Properties |
Length: 358aa MW: 39051.2 Da PI: 4.295 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.5G408300.10.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 93.4 | 3.7e-29 | 2 | 72 | 57 | 128 |
NAM 57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
ewyfF++rdkkyatg+r+nr t +g+Wk+tg+d++++ +++ vg+kktLvf++g+ap+g +tdWvm eyr+
Sevir.5G408300.10.p 2 EWYFFCPRDKKYATGSRANRLTPNGFWKSTGNDRTIVL-NTRIVGMKKTLVFHEGKAPRGDRTDWVMYEYRM 72
8*************************************.999****************************98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 358 aa
Download sequence Send
to blast |
MEWYFFCPRD KKYATGSRAN RLTPNGFWKS TGNDRTIVLN TRIVGMKKTL VFHEGKAPRG 60 DRTDWVMYEY RMEDNELDVG GFSKDAYVLC KIFKKSGPGP RIGEQYGATF NEEEWDNINT 120 ETAFPLVPCP SSEVVGATNE PPFQHTVAST SSVVSEPHVL TVASADGLPF EFSTSSITAT 180 DELQRHRLRH NGSEMVTANC SSDALDACDP TEFGGITSEE TDKWVRFLND STERDGGASE 240 KLAGLPAISE AQAQALEMNS DYCYHELVRL VESGGVSTAN DLSPGYVNTE CLNTPMVSGL 300 GAGDDYLEIN DLFPLGETAS FELPAPETQT LCGMTAPTQQ CGTPSHEHCT TTSEVEV*
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-28 | 2 | 96 | 72 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-28 | 2 | 96 | 72 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-28 | 2 | 96 | 72 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-28 | 2 | 96 | 72 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-28 | 2 | 96 | 75 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-28 | 2 | 96 | 75 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-28 | 2 | 96 | 75 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-28 | 2 | 96 | 75 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-28 | 2 | 96 | 75 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-28 | 2 | 96 | 75 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-28 | 2 | 96 | 75 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-28 | 2 | 96 | 75 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-28 | 2 | 96 | 72 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-28 | 2 | 96 | 72 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | HM053568 | 0.0 | HM053568.1 Setaria italica NAC transcription factor gene, complete cds. |