PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G391000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WOX | ||||||||
Protein Properties | Length: 213aa MW: 24074 Da PI: 8.3453 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.8 | 2.4e-20 | 11 | 72 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L elF+ r+ps+e++++++++l +++ ++V++WFqN++a+e++ Sevir.5G391000.1.p 11 KCGRWNPTAEQVKVLTELFRAgLRTPSTEQIQRISTHLsafgKVESKNVFYWFQNHKARERH 72 568*****************99**************************************95 PP | |||||||
2 | Wus_type_Homeobox | 110.7 | 7.8e-36 | 12 | 73 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 + RW+Pt+eQ+k+L+el+++GlrtP++e+iqri+++L+++Gk+e+kNVfyWFQN+kaRer++ Sevir.5G391000.1.p 12 CGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQNHKARERHH 73 78**********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 7.6E-4 | 10 | 77 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-17 | 12 | 72 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-12 | 13 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-7 | 14 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.00E-4 | 14 | 74 | No hit | No description |
PROSITE profile | PS50071 | 10.106 | 18 | 73 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010078 | Biological Process | maintenance of root meristem identity | ||||
GO:1902459 | Biological Process | positive regulation of stem cell population maintenance | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MEALSGRVGV KCGRWNPTAE QVKVLTELFR AGLRTPSTEQ IQRISTHLSA FGKVESKNVF 60 YWFQNHKARE RHHHKKRRRG ASSPDSGSGS GSNEEDAVGR AASHEAVVEP DLVLQPPESK 120 REARSYSHHH RLLTCYVRDV VEQQAAEALW ERPTREVETL ELFPLKSYVD LEAEKVRYVR 180 SSASEQCREF SFFDVAAGRD PPLELRLCSF GP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269|PubMed:12904206}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G391000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969717 | 0.0 | EU969717.1 Zea mays clone 334641 WUSCHEL-related homeobox 5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970617.1 | 1e-156 | WUSCHEL-related homeobox 9 | ||||
Swissprot | Q8W0F1 | 1e-127 | WOX9_ORYSJ; WUSCHEL-related homeobox 9 | ||||
TrEMBL | K3XLX7 | 1e-155 | K3XLX7_SETIT; Uncharacterized protein | ||||
STRING | Si002900m | 1e-155 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9411 | 36 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11260.1 | 2e-34 | WUSCHEL related homeobox 5 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G391000.1.p |
Publications ? help Back to Top | |||
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