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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G380300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 185aa MW: 19366.3 Da PI: 6.6242 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00066 | 109 | 131 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg Fs L H+r+H Sevir.5G380300.1.p 109 HECAVCGLEFSMGQALGGHMRRH 131 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.71E-5 | 58 | 85 | No hit | No description |
Pfam | PF13912 | 7.6E-11 | 60 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.492 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.6 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.37E-6 | 107 | 136 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 107 | 136 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.2E-11 | 108 | 133 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.217 | 109 | 136 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.89 | 109 | 131 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 111 | 131 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MTLTRHEAED RREMEGLRAD AVARLSLSSS PESSSSAAAG GDRPSSSSAA SRKAMAAEGV 60 FECKTCSRRF ASFQALGGHR TSHTRLQARM LSDPAGAAAA AERDRARVHE CAVCGLEFSM 120 GQALGGHMRR HRGEAPPASH DGAAQSGQAM PDLNLPPLED GDGGQDQQQS ADRSSEPQLL 180 NLLV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G380300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971116 | 1e-90 | EU971116.1 Zea mays clone 357761 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970517.1 | 1e-128 | zinc finger protein ZAT12 | ||||
TrEMBL | K3XMC8 | 1e-126 | K3XMC8_SETIT; Uncharacterized protein | ||||
STRING | Si003051m | 1e-127 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46090.1 | 4e-22 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G380300.1.p |