PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G367200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 229aa MW: 24281.2 Da PI: 6.4355 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 26.8 | 1e-08 | 23 | 61 | 24 | 59 |
EEEE-ST.T---EEEEEE-SSS..TTEEEEEEES--SS- CS WRKY 24 YYrCtsa.gCpvkkkversaed..pkvveitYegeHnhe 59 YYrC + +C +kkkv++++ p ++e+tY +eH+++ Sevir.5G367200.1.p 23 YYRCNRHrRCLAKKKVQQQDGSllPPMFEVTYVNEHTCH 61 ****9888*********998765578***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 1.0E-4 | 1 | 62 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-9 | 22 | 61 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-8 | 22 | 62 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-7 | 22 | 62 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MVKPNHHPPI HPCTVLMTLA WYYYRCNRHR RCLAKKKVQQ QDGSLLPPMF EVTYVNEHTC 60 HVLRDTDDAA ATMAPPGTTS RHRAGAARSS NGGDLFDLFP HVIGGGGGGG GSAEEENDAI 120 VSCLATVVSG AAPSSWWTPA AEATAGDPAA AFVAPAGRPA SVDGSVADDG AMMMTMVIED 180 TGFSSFCPVE EACQHQLVAN HHRDVHMDVA RLADTVWPQH AGGAWRRA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G367200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972234.1 | 1e-150 | WRKY transcription factor WRKY62 | ||||
TrEMBL | K3XPF8 | 1e-148 | K3XPF8_SETIT; Uncharacterized protein | ||||
STRING | Si003782m | 1e-149 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13243 | 26 | 32 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G367200.1.p |