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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G367100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 126aa MW: 13841.7 Da PI: 10.1414 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 28.1 | 3.9e-09 | 105 | 125 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 +Dgy+WrKYGqK++++ +f+r Sevir.5G367100.1.p 105 KDGYQWRKYGQKKIQNCNFSR 125 8***************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-8 | 96 | 125 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-7 | 100 | 125 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-6 | 105 | 125 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MAFDPVAKQL SEVLAGGYHR NTQLQALLSR PLDSRGQEVA MEFSQELSRV FAVSMAMLNS 60 NAAAPEVRTG NSFGVSTPVK DQRARSDIGE VVAPSKKEIT PSPHKDGYQW RKYGQKKIQN 120 CNFSR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G367100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972234.1 | 8e-87 | WRKY transcription factor WRKY62 | ||||
TrEMBL | K3XPF8 | 2e-85 | K3XPF8_SETIT; Uncharacterized protein | ||||
STRING | Si003782m | 3e-86 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13243 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 3e-06 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G367100.1.p |