PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G348000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 497aa    MW: 51297.3 Da    PI: 9.8355
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G348000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024251273223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +C+ Cg++F  ++ L+ H  + H
  Sevir.5G348000.1.p 251 SCHRCGEHFGKWEALEAHHLSkH 273
                         7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280252273IPR007087Zinc finger, C2H2
SuperFamilySSF563992.88E-22275495No hitNo description
Gene3DG3DSA:3.90.228.104.3E-11299472IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MGERRRRGSA TAAAAPGAAA AARAEEEKAA SAAAAGKAPP PTVWFALKRS LHCRSEPSDV  60
HVPRAKAGPA AVGGGGGNLS SIVTKRAAPR SGCSRSIANL RDVIHGSKRH PGQPPSCSPR  120
SIGSSEFLNP IAHEVVLSTN SRCELKITGF GGCGGLGAVG TAAAHDADGG GGSDGGVVSS  180
FVGTLRPGTP GPAWSGHGLP YSGSMRGGVR CTPPRSPNVL LERNGSVAVG HRASCEDTAK  240
AGAGKGSGGL SCHRCGEHFG KWEALEAHHL SKHAVTELVE GDSSRKIVEI ICRTSLLKSE  300
SSCVRIERVF KVHNTQRTLS RFEEYREAVK LKASKLPKKH PRCLADGNEL LRFHGATLSC  360
ALGAGSGASS SLCASDRCAV CRIIRHGFSA RKEGKAGVGV FTTSTSGRAF ESIEAPPPAS  420
CGDDGADPAA APRKALLVCR VIAGRVHKPL ENLREFAGQT GFDSLAGKVG PYSNIEELYL  480
LNPRALLPCF VVICKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G348000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9725840.0EU972584.1 Zea mays clone 383925 nucleic acid binding protein mRNA, complete cds.
GenBankFM2521260.0FM252126.1 Zea mays mRNA for C2H2 zinc finger protein (mrpi-2 gene), cultivar A69Y.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970210.10.0uncharacterized protein LOC101769772
TrEMBLK3XGZ40.0K3XGZ4_SETIT; Uncharacterized protein
STRINGSi001165m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-134C2H2 family protein