PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sevir.5G338800.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

LBD

Protein Properties

Length: 231aa MW: 23567.9 Da PI: 8.5034

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G338800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.6	3.7e-37	43	151	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.........paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C aCk+lrr+C+++Cv+ap+f + + +++fa+vhk+FGasnv k+l+++p r+da+ss++yeA+ar+ dPvyG+vg+il+ Sevir.5G338800.1.p 43 PCGACKFLRRRCVPGCVFAPHFgggsvrehgAGAGAAQFAAVHKVFGASNVAKMLSRVPVALRRDAASSVCYEAQARIADPVYGCVGTILA 133 7*******************99998877444557*************************************************** PP DUF260 83 lqqqleqlkaelallkee 100 lq+q++ ++ael+++++e Sevir.5G338800.1.p 134 LQHQVALVQAELSMAQTE 151 ***********99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.12	42	152	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.6E-41	43	149	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MSRAMQPPGK RAGAAPAAAA GPAHAQAQAQ AEEAPPGGAA GAPCGACKFL RRRCVPGCVF 60 APHFGGGSVR EHGAGAGAAQ FAAVHKVFGA SNVAKMLSRV PVALRRDAAS SVCYEAQARI 120 ADPVYGCVGT ILALQHQVAL VQAELSMAQT ELLNRRLALA TVNPAYSAAS PTSQMVNCGS 180 LSQAVDFIDI EPAMRGLPPP LVPSQQQPQR EDQDGGSPTI DVFSHNVLGK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-39	34	153	2	112	LOB family transfactor Ramosa2.1
5ly0_B	9e-39	34	153	2	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G338800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970122.1	1e-164	LOB domain-containing protein 4
Swissprot	Q9SRV3	2e-49	LBD20_ARATH; LOB domain-containing protein 20
TrEMBL	K3XQV3	1e-163	K3XQV3_SETIT; Uncharacterized protein
STRING	Si004290m	1e-164	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14085	25	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	5e-42	LOB domain-containing protein 20

Link Out ? help Back to Top
Phytozome	Sevir.5G338800.1.p