PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.5G336900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 334aa MW: 35162.6 Da PI: 4.9691 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 86 | 7.3e-27 | 14 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdk 90 lppGfrF Ptdee+vv+yL +++++++l++ i + d +++ Pw L +k ++++ + +fF++ + + +g+r++r + g+W+ +g+ k Sevir.5G336900.1.p 14 LPPGFRFVPTDEEVVVHYLLRRIQNQPLPV-GDILDDDPLSAPPWLLLAK-HGRKGDAFFFAEGQAMKGKGSRQKRsCAGGGTWEGQGQRK 102 79****************************.568999**********743.3445589******************88889********99 PP NAM 91 evlskkgel..........vglkktLvfykgrapkgektdWvmheyrl 128 + + ++ge+ + k L f g+ kg +t Wvmhey++ Sevir.5G336900.1.p 103 AAKGREGEKlrvrvdgeeiEWRKYALNFQ-GEVIKG-STGWVMHEYSI 148 99998444444555555536667778876.999887.9********86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.05E-31 | 9 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.471 | 14 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-19 | 15 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 334 aa Download sequence Send to blast |
MEAAAASTAS KLGLPPGFRF VPTDEEVVVH YLLRRIQNQP LPVGDILDDD PLSAPPWLLL 60 AKHGRKGDAF FFAEGQAMKG KGSRQKRSCA GGGTWEGQGQ RKAAKGREGE KLRVRVDGEE 120 IEWRKYALNF QGEVIKGSTG WVMHEYSITA PPELAASPVR VYRIRFSGHG KNAQKRKRNE 180 IDWASDEEEE VYQGAARAAA RPAVAEPDAL FVGGCPSAPQ PEPVSYLPVP VVAGSDALFV 240 GGCPSAPQLG PVSYLPMAPV YVGNGNLAEW TGTGAGGALS AATSSLAQDL PALVDGGGED 300 WNFIFSSDDL LPGFEFSGAA DAGAMSAPMV PAA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-15 | 10 | 151 | 13 | 145 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-15 | 10 | 151 | 13 | 145 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-15 | 10 | 151 | 13 | 145 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-15 | 10 | 151 | 13 | 145 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-15 | 10 | 151 | 13 | 145 | NAC domain-containing protein 19 |
4dul_B | 5e-15 | 10 | 151 | 13 | 145 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.5G336900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972189.1 | 0.0 | NAC transcription factor 47 | ||||
TrEMBL | A0A368RBI3 | 0.0 | A0A368RBI3_SETIT; Uncharacterized protein | ||||
STRING | Si004801m | 1e-136 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04070.1 | 2e-19 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.5G336900.1.p |