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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G329800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 769aa MW: 82284.5 Da PI: 6.6365 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.1 | 4.9e-21 | 93 | 148 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+eq++++e++F+++++p++++r++L+++lgL+ rqVk+WFqNrR++ k Sevir.5G329800.1.p 93 RKSYHRHTAEQIKAMEAVFRESPHPDEKQRQQLSQELGLSARQVKFWFQNRRTQIK 148 788999**********************************************9877 PP | |||||||
2 | START | 175.4 | 3.5e-55 | 264 | 492 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla... 77 ela +a+ el ++ +++ep+Wv+s+ + +++de+ + f++++v s+ea+r++gvv ++++lv+ ++d++ qW ++ Sevir.5G329800.1.p 264 ELAGRALHELATMCSSGEPLWVRSAetgrDVLDYDEYARLFQRGDVpgdqrpgWSVEASRETGVVYLDTTRLVNAFMDVN-QWMMLFPtmi 353 578999**************************************99**********************************.9998888888 PP ....EEEEEEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEEC CS START 78 ....kaetlevissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepks 158 +++vi+++ g++qlm+ae q l+plvp R+f f+R++++l+a++w+ vdvSvd ++ + ss ++ + pSg+++e+ s Sevir.5G329800.1.p 354 skaaTLGVIQVIENDdqdGVVQLMFAEVQTLTPLVPtREFNFLRHCKKLTADKWAMVDVSVDDVEPEAQttSSTACKCLKKPSGCVVEEQS 444 876655567777787888********************************************999988887999999************** PP TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ng++kvtwveh+ ++ + +++++rs sgla+ga++wva+lq qce+ Sevir.5G329800.1.p 445 NGRCKVTWVEHATCRNAAVPSMYRSAAASGLAFGARRWVAALQLQCER 492 **********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.59E-20 | 78 | 151 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.5E-23 | 80 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.155 | 90 | 150 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-18 | 92 | 154 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.95E-18 | 93 | 151 | No hit | No description |
Pfam | PF00046 | 1.7E-18 | 93 | 148 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 125 | 148 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 38.84 | 255 | 495 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.42E-28 | 258 | 492 | No hit | No description |
CDD | cd08875 | 1.86E-92 | 259 | 491 | No hit | No description |
SMART | SM00234 | 4.2E-44 | 264 | 492 | IPR002913 | START domain |
Pfam | PF01852 | 3.2E-45 | 265 | 492 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.6E-5 | 313 | 475 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 8.63E-9 | 511 | 694 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010062 | Biological Process | negative regulation of trichoblast fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 769 aa Download sequence Send to blast |
MGSSRPPPRT QDFFPAPALS LSLAVAFGRN EPAASGGEGV EAGDEGDGGI RLRQGEAAEI 60 SSENTGPGSQ SGGAWSGGEE AAGHGDGGGN KRRKSYHRHT AEQIKAMEAV FRESPHPDEK 120 QRQQLSQELG LSARQVKFWF QNRRTQIKAT QERHENSLLK SEMEKLQEEN RAMRELVKKS 180 PRCPGCGAAA ASTEEQQLRL ENAKLKAEIE RLRGTPGNTT TDAVASPASP SCSAQAIQIK 240 SRSSVEGDVH GGGLLGRDKT SILELAGRAL HELATMCSSG EPLWVRSAET GRDVLDYDEY 300 ARLFQRGDVP GDQRPGWSVE ASRETGVVYL DTTRLVNAFM DVNQWMMLFP TMISKAATLG 360 VIQVIENDDQ DGVVQLMFAE VQTLTPLVPT REFNFLRHCK KLTADKWAMV DVSVDDVEPE 420 AQTTSSTACK CLKKPSGCVV EEQSNGRCKV TWVEHATCRN AAVPSMYRSA AASGLAFGAR 480 RWVAALQLQC ERMVFSVATN IPARDSSGVA TPAGRRSVLK LAHRMTSSLC RVIGGSRDLA 540 WSRPASNRGG GQGDGVRMTS RRNIGDPGEP RGLIACAVLS AWLPVNPAAL FDFLRDESRR 600 HEWDVMLPPG RPVQSCASVA KGKDRRNCVT AYAARSPAGE QGSEWILQDS STNPCECTVA 660 YAPVDAAALR PVIDGHDSSG VALLPCGFAV MPDGLEPRPS VITSRKGEEE SRAAAEAGGS 720 LVTVAFQALA SSSPTADDAL PPDSVEAVAG LASCALGNIK KAMRCEDC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G329800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | PNIAATA | 1e-121 | D25322.1 Panicum miliaceum gene for cytosolic aspartate aminotransferase, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012701492.1 | 0.0 | homeobox-leucine zipper protein ROC9 | ||||
Swissprot | Q5JMF3 | 0.0 | ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9 | ||||
TrEMBL | A0A368RB90 | 0.0 | A0A368RB90_SETIT; Uncharacterized protein | ||||
STRING | Si004904m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP799 | 38 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G329800.1.p |