PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G324200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family VOZ
Protein Properties Length: 605aa    MW: 67258.4 Da    PI: 5.801
Description VOZ family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G324200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1VOZ425.67.8e-1313055221217
                 VOZ   1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 
                         p+psafl+pkcalwdc+rpa gse+++dycs++ha+la++e g+pgt+pv+rp+gidlkdg+lfaalsak+qgk+vgip cegaat+kspw
  Sevir.5G324200.1.p 305 PAPSAFLRPKCALWDCPRPAIGSERWHDYCSMYHADLAVKEeGPPGTMPVIRPRGIDLKDGPLFAALSAKIQGKHVGIPICEGAATSKSPW 395
                         89*************************************9879************************************************ PP

                 VOZ  91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldala 181
                         na+elfdl ++ege+irewlffdkprraf+sgnrkqrslpdy+grgwhesrkqvmk+fgglkrsyymdpqps+++ewhl+eyein++da+a
  Sevir.5G324200.1.p 396 NAPELFDLYIFEGESIREWLFFDKPRRAFDSGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSNTYEWHLFEYEINDCDAFA 486
                         ******************************************************************************************* PP

                 VOZ 182 lyrlelklvdekksakgkvskdsladlqkklgrlta 217
                         lyrle+k++d+kksak+k+++++l+++q++++rl+a
  Sevir.5G324200.1.p 487 LYRLEFKSSDAKKSAKSKIACNPLNEIQQQMVRLSA 522
                         **********************************97 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009631Biological Processcold acclimation
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048578Biological Processpositive regulation of long-day photoperiodism, flowering
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MLGPGVARLL LPRPSLFPRP PTPTQQKGEG EKKHDPIHSV PPRSPIAAAM GKGPSSRAAS  60
RHQQFRARAK TRVDDLQEMF SGLQSARKDS RPADAAVLEA QLQQMLREWR SELSAPSPAS  120
SLQDNTREVS DPPSETLRLL QLATAEEEDD ATSKLVEQQQ QRQQQQPPPP PPPPPPPANQ  180
NQGHALGCQD MKPEPREESV DVAVAQPQLL GQGVLPNGAP AAAAVFHDQE LTVEDFLYDD  240
DYKINLSGSN PDVLNNLEGI GQLEYPQFNF PQELPPNVYL DMSNCGQSTG DVFLHMSDLL  300
TTMTPAPSAF LRPKCALWDC PRPAIGSERW HDYCSMYHAD LAVKEEGPPG TMPVIRPRGI  360
DLKDGPLFAA LSAKIQGKHV GIPICEGAAT SKSPWNAPEL FDLYIFEGES IREWLFFDKP  420
RRAFDSGNRK QRSLPDYNGR GWHESRKQVM KDFGGLKRSY YMDPQPSNTY EWHLFEYEIN  480
DCDAFALYRL EFKSSDAKKS AKSKIACNPL NEIQQQMVRL SADSPVDIKR TARGRTKANP  540
IDVNSNIYSV PSTTVHANIP NAYQPVSQVD QMTYLNGSVV YGPHLPYGYS TERSDFYWNS  600
NDGT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G324200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0671960.0BT067196.1 Zea mays full-length cDNA clone ZM_BFb0282C22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682275.10.0transcription factor VOZ1 isoform X2
SwissprotQ9SGQ01e-152VOZ1_ARATH; Transcription factor VOZ1
TrEMBLA0A368RB310.0A0A368RB31_SETIT; Uncharacterized protein
STRINGSi000864m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23433888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28520.21e-139vascular plant one zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yasui Y,Kohchi T
    VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5
    [PMID:25351333]
  3. Kumar S,Choudhary P,Gupta M,Nath U
    VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition.
    Plant Physiol., 2018. 176(4): p. 2917-2930
    [PMID:29507119]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]