PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G324200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | VOZ | ||||||||
Protein Properties | Length: 605aa MW: 67258.4 Da PI: 5.801 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 425.6 | 7.8e-131 | 305 | 522 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 p+psafl+pkcalwdc+rpa gse+++dycs++ha+la++e g+pgt+pv+rp+gidlkdg+lfaalsak+qgk+vgip cegaat+kspw Sevir.5G324200.1.p 305 PAPSAFLRPKCALWDCPRPAIGSERWHDYCSMYHADLAVKEeGPPGTMPVIRPRGIDLKDGPLFAALSAKIQGKHVGIPICEGAATSKSPW 395 89*************************************9879************************************************ PP VOZ 91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldala 181 na+elfdl ++ege+irewlffdkprraf+sgnrkqrslpdy+grgwhesrkqvmk+fgglkrsyymdpqps+++ewhl+eyein++da+a Sevir.5G324200.1.p 396 NAPELFDLYIFEGESIREWLFFDKPRRAFDSGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSNTYEWHLFEYEINDCDAFA 486 ******************************************************************************************* PP VOZ 182 lyrlelklvdekksakgkvskdsladlqkklgrlta 217 lyrle+k++d+kksak+k+++++l+++q++++rl+a Sevir.5G324200.1.p 487 LYRLEFKSSDAKKSAKSKIACNPLNEIQQQMVRLSA 522 **********************************97 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 605 aa Download sequence Send to blast |
MLGPGVARLL LPRPSLFPRP PTPTQQKGEG EKKHDPIHSV PPRSPIAAAM GKGPSSRAAS 60 RHQQFRARAK TRVDDLQEMF SGLQSARKDS RPADAAVLEA QLQQMLREWR SELSAPSPAS 120 SLQDNTREVS DPPSETLRLL QLATAEEEDD ATSKLVEQQQ QRQQQQPPPP PPPPPPPANQ 180 NQGHALGCQD MKPEPREESV DVAVAQPQLL GQGVLPNGAP AAAAVFHDQE LTVEDFLYDD 240 DYKINLSGSN PDVLNNLEGI GQLEYPQFNF PQELPPNVYL DMSNCGQSTG DVFLHMSDLL 300 TTMTPAPSAF LRPKCALWDC PRPAIGSERW HDYCSMYHAD LAVKEEGPPG TMPVIRPRGI 360 DLKDGPLFAA LSAKIQGKHV GIPICEGAAT SKSPWNAPEL FDLYIFEGES IREWLFFDKP 420 RRAFDSGNRK QRSLPDYNGR GWHESRKQVM KDFGGLKRSY YMDPQPSNTY EWHLFEYEIN 480 DCDAFALYRL EFKSSDAKKS AKSKIACNPL NEIQQQMVRL SADSPVDIKR TARGRTKANP 540 IDVNSNIYSV PSTTVHANIP NAYQPVSQVD QMTYLNGSVV YGPHLPYGYS TERSDFYWNS 600 NDGT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G324200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067196 | 0.0 | BT067196.1 Zea mays full-length cDNA clone ZM_BFb0282C22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682275.1 | 0.0 | transcription factor VOZ1 isoform X2 | ||||
Swissprot | Q9SGQ0 | 1e-152 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A368RB31 | 0.0 | A0A368RB31_SETIT; Uncharacterized protein | ||||
STRING | Si000864m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2343 | 38 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-139 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G324200.1.p |
Publications ? help Back to Top | |||
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