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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G304700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 745aa MW: 84108.3 Da PI: 6.8881 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.2 | 3e-18 | 18 | 107 | 13 | 98 |
TT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 13 sgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++r+ +p+ f+ + g ++s t++l++ +g++W v+l + +gr++lt+GW++Fv+ n L +g+f+vF++dg+ f +v+ Sevir.5G304700.1.p 18 TRRMEIPRGFLCHVpeerrrapGATVASSATVILKNAEGKTWLVEL--EEIDGRVFLTSGWSKFVEGNCLGQGEFLVFEYDGNIHF--RVS 104 45799*****9666988888886666799*****************..********************************998777..787 PP EE- CS B3 96 vfr 98 vf Sevir.5G304700.1.p 105 VFG 107 775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.0E-22 | 3 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.87E-22 | 4 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.944 | 6 | 109 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.09E-20 | 7 | 106 | No hit | No description |
SMART | SM01019 | 1.0E-17 | 9 | 109 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-15 | 18 | 106 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 745 aa Download sequence Send to blast |
MEDQRRPRFF KVIVGDFTRR MEIPRGFLCH VPEERRRAPG ATVASSATVI LKNAEGKTWL 60 VELEEIDGRV FLTSGWSKFV EGNCLGQGEF LVFEYDGNIH FRVSVFGANA VEKAVWPSAS 120 GAPPTGNLGG GEQPCDISPS SKRRHSGDEL TETVKSLMRS HAQTVTTQRS TQGDEHISAQ 180 DTICFLDPHE VGCSKDELET SLSQKEPMED DKAKAIVEVM RTLHVDKLTV ELFCATLCLY 240 KWKVEAAAED INICRGKPQI LEQSLKQKLV LQFDFVKSQL RHFFPPDVDS ERIKKNNLEG 300 PNLSNQPLQC DLTVAPVKRR LVDEHKSCDL SHQHKRKTVK LQRGSPQPQT PRRSPRLAHL 360 NNTCNNTNEV LKERAEGLKP PQAAKDQVKD RVHKAHSLHE KPDNSLKAVR EETTGSLSQD 420 LRKLDPPQCE VGLSKENEHD QGETRKFLDH SNDRKNSEEQ MEINGVGTSE LFMSTDCIES 480 SPNNSGLTAY SRINELSFTW KHSQHANPIE KILLDIQRGN FVNTITHIQK VIQDDPSNVL 540 SADVIGAVVQ IGLLKCDLCL QDRNARKIVN ALLEYAKKVR EKHNFSIEMR KEEFSAKLQD 600 LLKWQLKELE TTYTSLESDY KKATTDSTIS FSTLEEHRKK LHAIKDGMKD SQQALMIRED 660 EIQKLAHKVA EHETICQKSL LEKVRVKTAL NSYQKTLGDV KEQLASTEPG FVDVDALVKV 720 EMDNMSTEIQ LSKGILLNIN FEKE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G304700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969801.1 | 0.0 | B3 domain-containing protein Os03g0120900 | ||||
Swissprot | Q5JNA1 | 0.0 | Y1237_ORYSJ; B3 domain-containing protein Os03g0120900 | ||||
TrEMBL | A0A368RAE4 | 0.0 | A0A368RAE4_SETIT; Uncharacterized protein | ||||
STRING | Si005032m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13235 | 26 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34400.1 | 1e-14 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G304700.1.p |