PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G296800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 408aa    MW: 44692.8 Da    PI: 9.8884
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G296800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.4e-18191286294
                         EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +k+l +sdv+++gr+vlpkk ae++   ++++ ++ l ++d ++ + W++k++y  ++ks++yvl+ ++ ++vka++L++gDf+v++ d+ 
  Sevir.5G296800.1.p 191 QKELRNSDVSQLGRIVLPKKEAESYlpTLISKDGRSLCMYDlLNAQLWTFKYRYwpNNKSRMYVLE-NTGDYVKAHDLRQGDFIVIYKDD- 279
                         7999***********************666677889*****7888*********89999999**99.********************553. PP

                         SEE..EE CS
                  B3  88 sefelvv 94 
                          + ++v+
  Sevir.5G296800.1.p 280 GNDRFVI 286
                         3333355 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.06E-24189286No hitNo description
Gene3DG3DSA:2.40.330.101.7E-24189295IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-13190292IPR003340B3 DNA binding domain
PROSITE profilePS508639.714190292IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-19190286IPR015300DNA-binding pseudobarrel domain
PfamPF023628.0E-14191286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MPARASHPAL ATSRPRGWPR PRGLAPRRGG AASPPPAPIS EPARHLSPRA PRLRVSARPP  60
HPAIKAPPSP TLGADAAAAA TAAASSSSFH HSLLLPRRFH RHGRHQQASN LPGLQLLLLR  120
RRHAAADHPE AKVRPPRAPR RHQEASGAST CECLGIHGLL HPAAVRVNEL DLNTAALDPD  180
HYATGLRVLL QKELRNSDVS QLGRIVLPKK EAESYLPTLI SKDGRSLCMY DLLNAQLWTF  240
KYRYWPNNKS RMYVLENTGD YVKAHDLRQG DFIVIYKDDG NDRFVIGAKK AGYEQTATVP  300
QIHQHMHLSA TLPAPQVFHD YAAPVAPEAD MLAIVPQADE IFDGILNSLP EIPVANMRYS  360
DFFDPFGDSM DMANPLGPNH SVNLATHFHD EKTGSSSFPY PKSGPLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A9e-411862991114B3 domain-containing transcription factor FUS3
6j9b_D9e-411862991114B3 domain-containing transcription factor FUS3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G296800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312864.10.0B3 domain-containing protein LFL1
SwissprotA4LBC01e-106LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLA0A368RA340.0A0A368RA34_SETIT; Uncharacterized protein
STRINGSi004459m1e-178(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.16e-40B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang J, et al.
    OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
    Plant J., 2013. 73(4): p. 566-78
    [PMID:23083333]
  3. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  4. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]