PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G296800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 408aa MW: 44692.8 Da PI: 9.8884 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.2 | 6.4e-18 | 191 | 286 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +k+l +sdv+++gr+vlpkk ae++ ++++ ++ l ++d ++ + W++k++y ++ks++yvl+ ++ ++vka++L++gDf+v++ d+ Sevir.5G296800.1.p 191 QKELRNSDVSQLGRIVLPKKEAESYlpTLISKDGRSLCMYDlLNAQLWTFKYRYwpNNKSRMYVLE-NTGDYVKAHDLRQGDFIVIYKDD- 279 7999***********************666677889*****7888*********89999999**99.********************553. PP SEE..EE CS B3 88 sefelvv 94 + ++v+ Sevir.5G296800.1.p 280 GNDRFVI 286 3333355 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 5.06E-24 | 189 | 286 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-24 | 189 | 295 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-13 | 190 | 292 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.714 | 190 | 292 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.73E-19 | 190 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.0E-14 | 191 | 286 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010116 | Biological Process | positive regulation of abscisic acid biosynthetic process | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0010373 | Biological Process | negative regulation of gibberellin biosynthetic process | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MPARASHPAL ATSRPRGWPR PRGLAPRRGG AASPPPAPIS EPARHLSPRA PRLRVSARPP 60 HPAIKAPPSP TLGADAAAAA TAAASSSSFH HSLLLPRRFH RHGRHQQASN LPGLQLLLLR 120 RRHAAADHPE AKVRPPRAPR RHQEASGAST CECLGIHGLL HPAAVRVNEL DLNTAALDPD 180 HYATGLRVLL QKELRNSDVS QLGRIVLPKK EAESYLPTLI SKDGRSLCMY DLLNAQLWTF 240 KYRYWPNNKS RMYVLENTGD YVKAHDLRQG DFIVIYKDDG NDRFVIGAKK AGYEQTATVP 300 QIHQHMHLSA TLPAPQVFHD YAAPVAPEAD MLAIVPQADE IFDGILNSLP EIPVANMRYS 360 DFFDPFGDSM DMANPLGPNH SVNLATHFHD EKTGSSSFPY PKSGPLM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 9e-41 | 186 | 299 | 1 | 114 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 9e-41 | 186 | 299 | 1 | 114 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00382 | DAP | Transfer from AT3G26790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G296800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021312864.1 | 0.0 | B3 domain-containing protein LFL1 | ||||
Swissprot | A4LBC0 | 1e-106 | LFL1_ORYSJ; B3 domain-containing protein LFL1 | ||||
TrEMBL | A0A368RA34 | 0.0 | A0A368RA34_SETIT; Uncharacterized protein | ||||
STRING | Si004459m | 1e-178 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8091 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26790.1 | 6e-40 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G296800.1.p |
Publications ? help Back to Top | |||
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