PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB

Protein Properties

Length: 277aa MW: 29188.8 Da PI: 7.9645

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G285800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.9	1.2e-18	32	79	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++av++ G g+W+t +r+ g+ R++k+c++rw +yl Sevir.5G285800.1.p 32 RGAWTPEEDELLARAVAREGEGRWRTLPRRAGLLRCGKSCRLRWMNYL 79 89****************************99**********97 PP
2	Myb_DNA-binding	48.1	2.7e-15	86	130	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+ ++E++l+v+++++lG++ W++Ia +++ gRt++++k++w+++l Sevir.5G285800.1.p 86 GPIAADEEDLIVRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 130 566689*************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.824	27	79	IPR017930	Myb domain
SuperFamily	SSF46689	1.87E-28	30	126	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-13	31	81	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-16	32	79	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-21	33	86	IPR009057	Homeodomain-like
CDD	cd00167	2.49E-11	34	79	No hit	No description
PROSITE profile	PS51294	25.242	80	134	IPR017930	Myb domain
SMART	SM00717	6.2E-14	84	132	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.8E-25	87	135	IPR009057	Homeodomain-like
Pfam	PF00249	1.6E-13	89	130	IPR001005	SANT/Myb domain
CDD	cd00167	4.57E-11	90	130	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MTRKQPAARR RGGGGGGGAV AGEGTTRAAL KRGAWTPEED ELLARAVARE GEGRWRTLPR 60 RAGLLRCGKS CRLRWMNYLR PDIKRGPIAA DEEDLIVRLH RLLGNRWSLI AGRLPGRTDN 120 EIKNYWNSHL SKKLIARGID PRTHTPLAAA AAPAPDKTPP PPPAVKPKPP VAPPPPPPPE 180 QPGSSSGAGG VGDDDDGGRD FPAMTGLGAD VFEGLDDPFC ALDAAGRGGF GMGCAMVDDG 240 TFSSFLDSLV SENQLAYYFG DHKNAEGGDN DDQAGA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-24	30	134	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G285800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108259	1e-136	AK108259.1 Oryza sativa Japonica Group cDNA clone:002-141-A12, full insert sequence.
GenBank	D88620	1e-136	D88620.1 Oryza sativa mRNA for OSMYB4, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682450.1	1e-137	transcription factor MYB4
Swissprot	Q38850	5e-69	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	K3XQX7	1e-136	K3XQX7_SETIT; Uncharacterized protein
STRING	Si004316m	1e-137	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	2e-65	myb domain protein 5

Link Out ? help Back to Top
Phytozome	Sevir.5G285800.1.p

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]