PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G264800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 386aa MW: 40210 Da PI: 7.5851 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 107 | 9.2e-34 | 193 | 250 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+ Sevir.5G264800.1.p 193 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSFQDPAVVITTYEGKHTHP 250 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-35 | 177 | 252 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.81E-30 | 184 | 252 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.489 | 187 | 252 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-40 | 192 | 251 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-26 | 193 | 250 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MSSGEFHFHD ELASLFAQRP APGPGEMMTQ QQQAPPASWF ADYLHAGAPG AGGMDYDLLC 60 RALDLPVPGD DVVKREMLVV DTGGGGFGAP TPTPSGGGTA PVTPNTTSSM SSSSSEAAGG 120 GGGGAGGFGA GEEDSLKKEE GEGEESKELG KGEDDADKSK KGAAAGKAKG KGEKRQRQPR 180 FAFMTKSEVD HLEDGYRWRK YGQKAVKNSP YPRSYYRCTT QKCPVKKRVE RSFQDPAVVI 240 TTYEGKHTHP IPATLRGSTH LLAAQLHHHH HAGAGGHHLG GVFPPPPLPQ MGAPPFGRAG 300 VLDVLGLLPP RGAHHGHTVP PAIGLASSRG MSGPMSTVAG ATTANASSSP PSLQMQHFMA 360 QDYGLLQDML PPPPFVHSNG GNIQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-28 | 183 | 253 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-28 | 183 | 253 | 8 | 78 | Probable WRKY transcription factor 4 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00440 | DAP | Transfer from AT4G18170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G264800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068116 | 0.0 | BT068116.1 Zea mays full-length cDNA clone ZM_BFb0045M20 mRNA, complete cds. | |||
GenBank | KJ727543 | 0.0 | KJ727543.1 Zea mays clone pUT5403 WRKY transcription factor (WRKY95) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969457.1 | 0.0 | probable WRKY transcription factor 48 | ||||
TrEMBL | K3XIU3 | 0.0 | K3XIU3_SETIT; Uncharacterized protein | ||||
STRING | Si001816m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 9e-50 | WRKY DNA-binding protein 71 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G264800.1.p |