PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G251900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 299aa    MW: 33333.3 Da    PI: 9.4016
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G251900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.37.9e-2579177191
                         EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                         f k+ltpsdv+k++rl +pkkfae++        +   +e++ l +ed ++g +W ++++ + +s++yvltkGW +F k+++L  gD+v F
  Sevir.5G251900.1.p  79 FSKILTPSDVGKQNRLLIPKKFAEKYfpkisktkS--YREEQILAFEDsSTGLVWHFRFSLWHSSNTYVLTKGWPSFTKEKKLSNGDTVSF 167
                         88**************************8877432..336678999997889*************************************** PP

                         EE-SS.SEE. CS
                  B3  83 kldgr.sefe 91 
                         +++ + se++
  Sevir.5G251900.1.p 168 YRSADkSEGT 177
                         *997766664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-3268174IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.98E-2677183IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-2177175No hitNo description
PROSITE profilePS5086314.05779186IPR003340B3 DNA binding domain
PfamPF023623.9E-2279179IPR003340B3 DNA binding domain
SMARTSM010191.8E-1579194IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MAFLATRLSR EMEVQMEKVA LCENPFHMVN PFLSRLYVSP WVSMSTPILP SGLSNSHGRL  60
GLWGAGMRGR QVIEIEFLFS KILTPSDVGK QNRLLIPKKF AEKYFPKISK TKSYREEQIL  120
AFEDSSTGLV WHFRFSLWHS SNTYVLTKGW PSFTKEKKLS NGDTVSFYRS ADKSEGTNCI  180
FIHIKPHVGI SSVPHHSAVP MFTPSSLLNE TDKCVCEGLG LGSGYRFEPT WKHLSFGSGG  240
LTPPMTLMPQ PTMFPESMSL DNSMGRAQKR LRLFGVDIDV PPRASGDDSC NGWTNGVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-27761895117B3 domain-containing transcription factor NGA1
5os9_B6e-27761895117B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G251900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK3XSS70.0K3XSS7_SETIT; Uncharacterized protein
STRINGSi004979m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16167813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-33B3 family protein