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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sevir.5G234400.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
C3H |
| Protein Properties |
Length: 387aa MW: 42464.4 Da PI: 6.1902 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.5G234400.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 37.4 | 4.1e-12 | 157 | 182 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C f++rt tCkyG+ CkF H++
Sevir.5G234400.1.p 157 GEKDCAFYMRTRTCKYGEACKFDHPQ 182
7889********************97 PP
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| 2 | zf-CCCH | 20.1 | 1.1e-06 | 206 | 232 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C++ ++ tC++ +rCkF+H++
Sevir.5G234400.1.p 206 PGEPDCPYLVKSNTCRFKSRCKFNHPK 232
5789*********************96 PP
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| 3 | zf-CCCH | 34.5 | 3.4e-11 | 277 | 302 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++ C+f+++tG+Cky +CkF+H++
Sevir.5G234400.1.p 277 GETVCDFYMKTGFCKYSQKCKFHHPM 302
6789********************95 PP
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| 4 | zf-CCCH | 35.3 | 1.9e-11 | 333 | 356 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
e C f++r+GtC+yG+ CkF H+p
Sevir.5G234400.1.p 333 EACAFYMRSGTCRYGAHCKFDHPP 356
78********************96 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 9.7E-4 | 155 | 182 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.413 | 155 | 183 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.7E-5 | 156 | 182 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.0E-9 | 157 | 182 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.4E-4 | 161 | 181 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.53 | 205 | 232 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.671 | 205 | 233 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.7E-4 | 207 | 232 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.3E-6 | 275 | 302 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.732 | 275 | 303 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.15E-7 | 276 | 304 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.4E-9 | 277 | 302 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 280 | 300 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1E-6 | 329 | 356 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.065 | 329 | 357 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.54E-6 | 332 | 357 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.5E-9 | 333 | 356 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.9E-5 | 333 | 354 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 387 aa
Download sequence Send
to blast |
MSDPLYPYSR GALPGGDGAL PPPRYSDLEV DLIAARYTGT PPPYPSSADV SAFDSHVGAF 60
DYGVGAFDSH VGAFDSGVGA FDSHVGAFDS HIGAFDSRVG AFDSRFGARR SAEALYHQSF 120
MGSHSTVAQN EALYSPNTMA KRPRLESSLP IYPQRPGEKD CAFYMRTRTC KYGEACKFDH 180
PQWVPEGGVP NWKEVPNVED YYPERPGEPD CPYLVKSNTC RFKSRCKFNH PKEKVNALEA 240
GTDNEHSLIA DSAILPVRPS EPVCSIEPVP IYPQRPGETV CDFYMKTGFC KYSQKCKFHH 300
PMNRSEPGAN GNWDPEQPVT LTLAGLPRRE GAEACAFYMR SGTCRYGAHC KFDHPPPQEA 360
ISKLQAAGKE DEEKKEGEAK EGSVVP*
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