PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G208500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 437aa MW: 46362.3 Da PI: 8.7595 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.9 | 4e-06 | 50 | 72 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H Sevir.5G208500.1.p 50 FVCEICGKGFQRDQNLQLHRRGH 72 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00076 | 158 | 176 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + Sevir.5G208500.1.p 158 DCGTVFSRRDSFITHRAFC 176 9**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.64E-8 | 49 | 72 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 50 | 72 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.012 | 50 | 72 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.614 | 50 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 93 | 123 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 9.64E-8 | 123 | 148 | No hit | No description |
SMART | SM00355 | 160 | 128 | 148 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MSNLTSSASA GPDAPPVSGN KRKRSLPGNP DPDAEVVALS PATLMATNRF VCEICGKGFQ 60 RDQNLQLHRR GHNLPWKLKQ RGTGKEAPKK KVYVCPEASC VHHDPARALG DLTGIKKHFF 120 RKHGEKKWKC DKCSKKYAVH SDWKAHSKIC GTREYKCDCG TVFSRRDSFI THRAFCDALT 180 EESAKAIGFN AMAAAAPAHH HHPLLFSPPP QVMQQHQVQD LAALQENHHQ ELMQPPQPQQ 240 HCNYAMKTEM PPWPAMTYDH HAHPLLQPLC HAAAQSSATS APPPQLPAAS AHLSATALLQ 300 KAAQMGATIA GAGAGGAGAH YTQMAGPATS APGSATFGLG LPGLNAQQPA RGRGGEDGGG 360 GAGAGRGGDG MTRDFLGLRA FSHREILGLA GFDSSCMGAV AANADMGCYE PQQHAQAPAQ 420 QQQSSNEPWH GMGSHS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-33 | 124 | 185 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-33 | 124 | 185 | 3 | 64 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G208500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956926 | 0.0 | EU956926.1 Zea mays clone 1577561 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969020.1 | 0.0 | protein indeterminate-domain 7 | ||||
Swissprot | Q8H1F5 | 1e-115 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | K3XHY2 | 0.0 | K3XHY2_SETIT; Uncharacterized protein | ||||
STRING | Si001504m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 5e-94 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G208500.1.p |
Publications ? help Back to Top | |||
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