PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G127400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 293aa    MW: 31390 Da    PI: 9.9366
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G127400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.8e-32214272159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Sevir.5G127400.1.p 214 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 272
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-33199272IPR003657WRKY domain
SuperFamilySSF1182901.7E-28206273IPR003657WRKY domain
PROSITE profilePS5081129.356209274IPR003657WRKY domain
SMARTSM007749.8E-37214273IPR003657WRKY domain
PfamPF031065.2E-25215271IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MHFAPTWESK ARERNKVERE AEREMFPSPG RAVMALGHGQ HSSSTAGDAM AAAAAAASST  60
PTITFSFQPS PPPTSSLAHH GVLGYSSLLL DHPTTATTSS SSSHAPSSTI PPPTLHHLHA  120
AHVSPPTRSS PPPPPHPWST CDEGHDQGQG RHRGKGAAAV SEGLAAGGHN GAAAAALGVG  180
AVRMKKAGGG GGKARRKVRE PRFCFKTMSD VDVLDDGYKW RKYGQKVVKN TQHPRSYYRC  240
TQDNCRVKKR VERLAEDPRM VITTYEGRHV HSPSRDEDDD AARANAEMSF IW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-25205271874Probable WRKY transcription factor 4
2lex_A2e-25205271874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G127400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369001e-159BT036900.1 Zea mays full-length cDNA clone ZM_BFb0146L21 mRNA, complete cds.
GenBankEU9636461e-159EU963646.1 Zea mays clone 265112 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968441.11e-147probable WRKY transcription factor 12
TrEMBLA0A368R4J11e-146A0A368R4J1_SETIT; Uncharacterized protein
STRINGGRMZM2G151444_P011e-107(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.14e-47WRKY DNA-binding protein 13