PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G121500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | BES1 | ||||||||
Protein Properties | Length: 171aa MW: 18479.4 Da PI: 9.2733 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 133.1 | 3.1e-41 | 44 | 157 | 2 | 116 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspes 92 +s r+pt +ErEnn++RERrRR++aa+iyaGLRa+++y lpk+aD+n+Vl+ALc+eAG+ v+d+G++ r + p a+ +s++ ++ s Sevir.5G121500.1.p 44 TSLRHPTPRERENNRQRERRRRQVAARIYAGLRAHAGYTLPKHADQNDVLRALCAEAGYHVDDGGNVTRLQGVPD-GAAGPSCSSDHQKPS 133 789******************************************************************666676.566666666666666 PP DUF822 93 slqsslkssalaspvesysaspks 116 s + ++++ +l+ p ++++ +++ Sevir.5G121500.1.p 134 SHSGATEAATLQQPEQQQQLEEET 157 666677888888888887766554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.1E-30 | 46 | 150 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MEVGAGREEG EAAAAPVAGR RGCIRSTQGP WTVRRRGRGG GLTTSLRHPT PRERENNRQR 60 ERRRRQVAAR IYAGLRAHAG YTLPKHADQN DVLRALCAEA GYHVDDGGNV TRLQGVPDGA 120 AGPSCSSDHQ KPSSHSGATE AATLQQPEQQ QQLEEETKLS LELTLSFAYM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 4e-11 | 18 | 112 | 343 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 4e-11 | 18 | 112 | 343 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 4e-11 | 18 | 112 | 343 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 4e-11 | 18 | 112 | 343 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G121500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU947756 | 1e-114 | EU947756.1 Zea mays clone 356679 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971713.1 | 1e-121 | protein BZR1 homolog 3-like | ||||
TrEMBL | A0A368R3Z7 | 1e-120 | A0A368R3Z7_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J23744.1.p | 3e-73 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13201 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.3 | 5e-14 | BES1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G121500.1.p |