PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

G2-like

Protein Properties

Length: 452aa MW: 47983.6 Da PI: 5.21

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G121300.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.5	1.1e-31	265	320	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++ LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Sevir.5G121300.3.p 265 KARRCWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 320 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.94E-17	262	323	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.69	262	322	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-28	263	323	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-26	265	320	IPR006447	Myb domain, plants
Pfam	PF00249	9.4E-7	267	318	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009266	Biological Process	response to temperature stimulus
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010452	Biological Process	histone H3-K36 methylation
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:1903507	Biological Process	negative regulation of nucleic acid-templated transcription
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MASSASDLTL DYKPNGNSNG GGAYAVIPKQ QQEPLVDGHH LTTEQTTQKL REFLARLEEE 60 RLKIDAFKRE LPLCMHLLNH AMEAYGQQLE AYQMGSLQGA PARPLVLEEF IPLKKIGIDA 120 AADKMGNPPS EKASWMESAQ LWNGPGAALA AADTAAKGPQ TPKESSEHQL PIDTLGALDT 180 AAGQRNGGAF LPFAKDKAAA EAAALPELAL APAEKDAAET DRKPYLDAAG ANGGLGARRD 240 VQNGVKPASN ATDGQAPPPP QTHRKARRCW SPELHRRFVN ALQILGGAQV ATPKQIRELM 300 KVDGLTNDEV KSHLQKYRLH TRRPMPTPPA PATAAPQLVV LGGIWVPPEY ATQAAGQAIY 360 GAHPATQPHY TAAVAAAQEY YPPPAAVHHL QHHPAAAAYK AAMAGSPPES SESIEDEDEG 420 EEREEDGDDD DDVPAAKTDG EDSTGAAAIK Y*

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MASSASDLTL DYKPNGNSNG GGAYAVIPKQ QQEPLVDGHH LTTEQTTQKL REFLARLEEE  60
RLKIDAFKRE LPLCMHLLNH AMEAYGQQLE AYQMGSLQGA PARPLVLEEF IPLKKIGIDA  120
AADKMGNPPS EKASWMESAQ LWNGPGAALA AADTAAKGPQ TPKESSEHQL PIDTLGALDT  180
AAGQRNGGAF LPFAKDKAAA EAAALPELAL APAEKDAAET DRKPYLDAAG ANGGLGARRD  240
VQNGVKPASN ATDGQAPPPP QTHRKARRCW SPELHRRFVN ALQILGGAQV ATPKQIRELM  300
KVDGLTNDEV KSHLQKYRLH TRRPMPTPPA PATAAPQLVV LGGIWVPPEY ATQAAGQAIY  360
GAHPATQPHY TAAVAAAQEY YPPPAAVHHL QHHPAAAAYK AAMAGSPPES SESIEDEDEG  420
EEREEDGDDD DDVPAAKTDG EDSTGAAAIK Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-13	265	318	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-13	265	318	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-13	265	318	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-13	265	318	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play a role in regulatory networks controlling development and metabolism. {ECO:0000250\|UniProtKB:Q6Z869}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00261	DAP	Transfer from AT2G03500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G121300.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT086572	0.0	BT086572.2 Zea mays full-length cDNA clone ZM_BFc0184N23 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004968400.1	0.0	transcription factor NIGTH1
Swissprot	Q5VRW2	1e-147	NOH1_ORYSJ; Transcription factor NIGTH1
TrEMBL	K3XH59	0.0	K3XH59_SETIT; Uncharacterized protein
STRING	Si001230m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	5e-69	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sevir.5G121300.3.p

Publications ? help Back to Top
Kamrul Huda KM, et al. Salinity and drought tolerant OsACA6 enhances cold tolerance in transgenic tobacco by interacting with stress-inducible proteins. Plant Physiol. Biochem., 2014. 82: p. 229-38 [PMID:24992889]