PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G095000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family RAV
Protein Properties Length: 373aa    MW: 39977.9 Da    PI: 10.0441
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G095000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2422.4e-1377125155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  Sevir.5G095000.1.p  77 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPNEEAAARAYDVAALRYRG 125
                         78****9888.8*********......44*************************98 PP
2B3100.41e-31192296197
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+ tpsdv+k++rlv+pk++ae+h       +  + e++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++vF++
  Sevir.5G095000.1.p 192 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrapEATTGEGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSH 282
                         89***************************9988777789***************************************************9 PP

                         -SS.SEE..EEEEE CS
                  B3  85 dgr.sefelvvkvf 97 
                         +   +e++l++  +
  Sevir.5G095000.1.p 283 STYgQEKQLFIDCR 296
                         86656666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.37E-1477133No hitNo description
SuperFamilySSF541712.75E-1777133IPR016177DNA-binding domain
PfamPF008475.1E-977125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-2178133IPR001471AP2/ERF domain
PROSITE profilePS5103221.93178133IPR001471AP2/ERF domain
SMARTSM003804.5E-2378139IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.0E-38190307IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.72E-30190295IPR015300DNA-binding pseudobarrel domain
CDDcd100173.39E-29191283No hitNo description
PfamPF023621.4E-28192296IPR003340B3 DNA binding domain
PROSITE profilePS5086314.48192299IPR003340B3 DNA binding domain
SMARTSM010196.1E-24192298IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGMESMCPTA AEGSSSAASS SSRSTGASTA TTESGAAQQQ QQQQQPQAAA AAGGGEASPA  60
DEQAVTSAAA AVAQGSSRYK GVVPQPNGRW GAQIYERHAR VWLGTFPNEE AAARAYDVAA  120
LRYRGREAAT NFPGAGASAP ELAFLAAHSK AEIVDMLRKH TYADELRQGL RRGRGMGARA  180
QPTPAWARAL LFEKAVTPSD VGKLNRLVVP KQHAEKHFPL KRAPEATTGE GVLLNFEDGE  240
GKVWRFRYSY WNSSQSYVLT KGWSRFVREK GLRAGDTIVF SHSTYGQEKQ LFIDCRKTKT  300
ATTDAAPAPA AAPAEKPKEA RVVVRLFGVD ITGDGCQKRA RPVEMAFEQG QEFLKKQCVA  360
HHRSPALGAF LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-5019130613125DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G095000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968155.10.0AP2/ERF and B3 domain-containing protein Os01g0141000
SwissprotQ9AWS01e-150Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLK3XJ360.0K3XJ36_SETIT; Uncharacterized protein
STRINGSi001909m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-89related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]