PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G095000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | RAV | ||||||||
Protein Properties | Length: 373aa MW: 39977.9 Da PI: 10.0441 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42 | 2.4e-13 | 77 | 125 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f +e Aa+a++ a+++++g Sevir.5G095000.1.p 77 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPNEEAAARAYDVAALRYRG 125 78****9888.8*********......44*************************98 PP | |||||||
2 | B3 | 100.4 | 1e-31 | 192 | 296 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ tpsdv+k++rlv+pk++ae+h + + e++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++vF++ Sevir.5G095000.1.p 192 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrapEATTGEGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSH 282 89***************************9988777789***************************************************9 PP -SS.SEE..EEEEE CS B3 85 dgr.sefelvvkvf 97 + +e++l++ + Sevir.5G095000.1.p 283 STYgQEKQLFIDCR 296 86656666666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.37E-14 | 77 | 133 | No hit | No description |
SuperFamily | SSF54171 | 2.75E-17 | 77 | 133 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.1E-9 | 77 | 125 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-21 | 78 | 133 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.931 | 78 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-23 | 78 | 139 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-38 | 190 | 307 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.72E-30 | 190 | 295 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.39E-29 | 191 | 283 | No hit | No description |
Pfam | PF02362 | 1.4E-28 | 192 | 296 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.48 | 192 | 299 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-24 | 192 | 298 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MGMESMCPTA AEGSSSAASS SSRSTGASTA TTESGAAQQQ QQQQQPQAAA AAGGGEASPA 60 DEQAVTSAAA AVAQGSSRYK GVVPQPNGRW GAQIYERHAR VWLGTFPNEE AAARAYDVAA 120 LRYRGREAAT NFPGAGASAP ELAFLAAHSK AEIVDMLRKH TYADELRQGL RRGRGMGARA 180 QPTPAWARAL LFEKAVTPSD VGKLNRLVVP KQHAEKHFPL KRAPEATTGE GVLLNFEDGE 240 GKVWRFRYSY WNSSQSYVLT KGWSRFVREK GLRAGDTIVF SHSTYGQEKQ LFIDCRKTKT 300 ATTDAAPAPA AAPAEKPKEA RVVVRLFGVD ITGDGCQKRA RPVEMAFEQG QEFLKKQCVA 360 HHRSPALGAF LL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-50 | 191 | 306 | 13 | 125 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G095000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968155.1 | 0.0 | AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
Swissprot | Q9AWS0 | 1e-150 | Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
TrEMBL | K3XJ36 | 0.0 | K3XJ36_SETIT; Uncharacterized protein | ||||
STRING | Si001909m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 2e-89 | related to ABI3/VP1 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G095000.1.p |
Publications ? help Back to Top | |||
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