PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G094900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | RAV | ||||||||
Protein Properties | Length: 301aa MW: 33169.5 Da PI: 10.2197 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.8 | 1.7e-10 | 35 | 83 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I+d r +r++lg+f + Aa+a + a+ +++g Sevir.5G094900.1.p 35 SRFKGVVPQP-KGRWGAQIYD------RhARVWLGTFPDEAIAARAFDVAAIRYRG 83 689***9888.7*********......44**********99*************98 PP | |||||||
2 | B3 | 93 | 2.2e-29 | 150 | 241 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+kv tpsdv+k++rlv+pk++ae+h + +++ l +ed +g++W+++++y++ s++yvltkGW++Fv+++gL++gD+v F+ Sevir.5G094900.1.p 150 FEKVVTPSDVGKLNRLVVPKQHAEKHfplkrapETAAGKGVLLNFEDGEGKVWRFRYSYWNISQSYVLTKGWSRFVREKGLRAGDTVAFSQ 240 99*************************99887755556999************************************************94 PP - CS B3 85 d 85 + Sevir.5G094900.1.p 241 S 241 3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.38E-20 | 35 | 92 | No hit | No description |
Pfam | PF00847 | 6.1E-5 | 35 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-15 | 35 | 92 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-19 | 36 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-22 | 36 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.099 | 36 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-6 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-6 | 73 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-37 | 145 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-29 | 147 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.70E-29 | 148 | 238 | No hit | No description |
SMART | SM01019 | 2.1E-22 | 150 | 256 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.311 | 150 | 257 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-26 | 150 | 240 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MESAGTAVAF AASNSSQESG ADELAALQLL SRQPSRFKGV VPQPKGRWGA QIYDRHARVW 60 LGTFPDEAIA ARAFDVAAIR YRGRDAVTNF PEERASAGEL AFLAAHSKAE IVDMLRKHTY 120 AADLRPEVRR GRGMGARAQP TPPWARKPLF EKVVTPSDVG KLNRLVVPKQ HAEKHFPLKR 180 APETAAGKGV LLNFEDGEGK VWRFRYSYWN ISQSYVLTKG WSRFVREKGL RAGDTVAFSQ 240 SVYGQDNQLL INYRKTPSWE QDEAAAHAIA VEARSIKLFG VDIAGGGREA GEGHVEVLER 300 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-48 | 149 | 254 | 13 | 115 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G094900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095812 | 0.0 | FP095812.1 Phyllostachys edulis cDNA clone: bphyem125h21, full insert sequence. | |||
GenBank | FP096835 | 0.0 | FP096835.1 Phyllostachys edulis cDNA clone: bphyem207b07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818627.1 | 1e-168 | AP2/ERF and B3 domain-containing protein Os01g0141000-like | ||||
Swissprot | Q9AWS0 | 1e-118 | Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
TrEMBL | A0A368R4V3 | 0.0 | A0A368R4V3_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Eb00701.1.p | 1e-177 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 3e-90 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G094900.1.p |
Publications ? help Back to Top | |||
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