PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G083200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 295aa    MW: 30774.3 Da    PI: 9.124
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G083200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-0583102221
                         EETTTTEEESSHHHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                         +C+ Cgk+F ++  L  H+r
  Sevir.5G083200.1.p  83 PCTECGKRFASWKALFGHMR 102
                         6******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003555.3E-482104IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.49282109IPR007087Zinc finger, C2H2
SuperFamilySSF576674.52E-883104No hitNo description
PfamPF139122.1E-884106IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-484104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SuperFamilySSF576674.52E-8201228No hitNo description
PfamPF139127.9E-11206230IPR007087Zinc finger, C2H2
SMARTSM003551.2206228IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369206228IPR007087Zinc finger, C2H2
PROSITE patternPS000280208228IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MATPVQPAAS RSPPRPPPPP LPLPPPPPHH DTTLTLALAL PPPAFACALS PRPLQARRPR  60
PDGAASSSSF PRVRSSPTGD TLPCTECGKR FASWKALFGH MRCHPERQWR GITPPPHLRH  120
DHHQQQQQQH AVGAPPLAVA AAAAGQQFTV QEREIAASLL MLAGARTPGV GKGKKGVLAS  180
SSAKKESCST PASSPTAAAP PKCDDHKCSV CARGFATGQA LGGHKRCHWE KACAEVMAVA  240
TPSSCSPLLA TSEEVVAATT LDLNLPPPGT MLALPWKSDE DGSLNAALDL KLGY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G083200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751881e-45EU975188.1 Zea mays clone 483820 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682354.10.0zinc finger protein ZAT3
TrEMBLA0A368R2M10.0A0A368R2M1_SETIT; Uncharacterized protein
STRINGSi004657m1e-165(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-30C2H2-like zinc finger protein