PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Sevir.5G071700.4.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 217aa MW: 23387.5 Da PI: 9.9182

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G071700.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.2	8.2e-10	32	81	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 a +e+ErrRR++++s +L +l+P + p ++ + L +A YIk+L Sevir.5G071700.4.p 32 ARKEIERRRRQHMKSLCVKLASLIPReHF--PRDAMTQVGSLNEAAAYIKKL 81 679*********************876..9999*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.639	28	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.21E-5	31	85	No hit	No description
Pfam	PF00010	3.9E-7	32	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-11	32	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-13	33	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-7	34	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MEMGAKKSRS SDTATAGRRS STSNSSGASA VARKEIERRR RQHMKSLCVK LASLIPREHF 60 PRDAMTQVGS LNEAAAYIKK LKERVDELQQ KRSSAQLMAA AMRGGGGGSA ASTSAATVMS 120 GGGGARSEEA AEEAPVVEVL HRHDDGSSLD VVLVSGVERS FKLHEVVTVL EEEGAEIINA 180 NLSVADRKVF HTIHCRVRDN SLMSIQSMHT LIWYIR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G071700.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967962.1	1e-138	transcription factor bHLH162 isoform X1
Refseq	XP_012701638.1	1e-138	transcription factor bHLH162 isoform X1
Refseq	XP_022682228.1	1e-138	transcription factor bHLH162 isoform X1
Refseq	XP_022682229.1	1e-138	transcription factor bHLH162 isoform X1
TrEMBL	A0A368R269	1e-136	A0A368R269_SETIT; Uncharacterized protein
STRING	Si002881m	1e-136	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-07	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sevir.5G071700.4.p