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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sevir.5G060600.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
AP2 |
| Protein Properties |
Length: 184aa MW: 19625.7 Da PI: 6.9347 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.5G060600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 39.5 | 1.4e-12 | 122 | 166 | 11 | 55 |
AP2 11 krgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55
++g+W A+I e + k ++lg+f+t+eeAa+a++ a+ +l+g
Sevir.5G060600.1.p 122 RDGKWQARIGRIGEsR--DtKDIYLGTFDTEEEAAEAYDIAAIELRG 166
48******99953323..36*************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 184 aa
Download sequence Send
to blast |
MATVQPQSPA GPAPSPPQEG RHDRRAGNKQ LAVGGGGGGE ERKMGGGASA GAGGGRKLVA 60
EAMHKYAASR FHGVTSVSCS RTGKISDYEK EIEIIKTMSQ DEFVAYIRRQ SSCFSRGTSS 120
YRDGKWQARI GRIGESRDTK DIYLGTFDTE EEAAEAYDIA AIELRGVHAV TNFDISNYCE 180
DGL*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT035529 | 5e-62 | BT035529.1 Zea mays full-length cDNA clone ZM_BFb0068F10 mRNA, complete cds. |
| Publications
? help Back to Top |
- Todd J,Post-Beittenmiller D,Jaworski JG
KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
Plant J., 1999. 17(2): p. 119-30
[PMID:10074711] - Molitor AM,Bu Z,Yu Y,Shen WH
Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
PLoS Genet., 2014. 10(1): p. e1004091
[PMID:24465219] - Feng J,Chen D,Berr A,Shen WH
ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
Plant Physiol., 2016. 172(3): p. 1746-1759
[PMID:27630184] - Santuari L, et al.
The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
Plant Cell, 2016. 28(12): p. 2937-2951
[PMID:27920338] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
[PMID:29078398]
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