PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G032600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 620aa    MW: 66179.8 Da    PI: 6.6782
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G032600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.8e-16370416455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Sevir.5G032600.1.p 370 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 416
                         5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.67E-17363420No hitNo description
SuperFamilySSF474591.83E-20364425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-20370424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-13370416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MSDGNEFAEL LWENGQAVVH GRRKQTQTSF PPFTCAAASS SRAQEKQPGS DPVALFKTGG  60
VFGAGGLVTS VHDFSSGLDA TRDNGDLDDT VPWIHYPIIE EDSAAAPALA ESYSPDFFSE  120
LHAAAAAAAA TNPSSLPPPI QHTTNNRSTP IATTSREPEP SKESHRMPVP GPATRPEPPQ  180
AEFAATKQTR LGGGAEGLMN FSLFSRPAAM ARASLQSAQR PPQTGTDKAS NVTTSTRVES  240
TVLQSSIGPR TTPVFTDQRT AWSQPKEVRF SCTAAPTAGN LQQEMPRDRL GSMTLQKQVK  300
TRKEPEAAVA TSSVCSGNGA GIGNDESWRQ HKRKSQAECS ASQDDDLEDE SGGARRSGSR  360
GTKRSRTAEV HNLSERRRRD RINEKMRALQ ELIPNCNKID KASMLDEAIE YLKTLQLQVQ  420
MMSMGSGLCI PPMLLPPTMQ HLQIPQIAHF PHLGMGLGYG MGVFDMNSSP AVPFPSMPGA  480
HFPCSMIPGT TAQGLGMPGR NTVPMFGLPG QAIHPSASSV QPFPSLAGLP VRPNLAPQVS  540
AAMANMVQEQ HQDVATQQQQ NMNSEARQGT NTGDPELQTI LQVENRHFSV PSSAQTESGP  600
FLDSGGNRTD TAGRNGAET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374379ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G032600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682498.10.0transcription factor APG isoform X2
SwissprotQ0JNI90.0PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLK3XFM90.0K3XFM9_SETIT; Uncharacterized protein
STRINGSi000700m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-44phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]