PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G031700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 251aa MW: 27824.7 Da PI: 10.109 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47 | 3.3e-15 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+ r t+ +R +g++KKA+EL LC+a+++v++++++ Sevir.5G031700.1.p 11 ITNTLSRRATYKRRCQGLMKKASELAALCGAKACVVVYGES 51 899************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 8.76E-21 | 1 | 82 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-16 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.778 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.34E-25 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 2.2E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.1E-15 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-8 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MARKKVNLQL ITNTLSRRAT YKRRCQGLMK KASELAALCG AKACVVVYGE SKAQPEVWPS 60 YQEARRLLKK YRDMPEHQRF KKVENQKDFL GSRVTKLRGM VNKSESENNK RESFDILHER 120 MNGGRPGLFG ISTEELTRLQ KIVSERKSQA KERLLELGAG QGQGAPLEPR VQLLPGSSSQ 180 PQDPNTQQPQ PQHPPNGAVL GTLPSSAFPG SSGGCASPSS TGGDMMQPYS PGCYSEFPWT 240 WEWSTFPPME * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G031700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971529.1 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | K3XSM5 | 0.0 | K3XSM5_SETIT; Uncharacterized protein | ||||
STRING | Si004925m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22590.2 | 1e-22 | AGAMOUS-like 87 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G031700.1.p |