PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G031200.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 455aa    MW: 46802.3 Da    PI: 8.1951
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G031200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-30165223259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v+r+aed++++++tYeg+Hnh+
  Sevir.5G031200.2.p 165 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvACPVRKQVQRCAEDKTILVTTYEGHHNHP 223
                         7****************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-32149225IPR003657WRKY domain
SuperFamilySSF1182902.88E-27157225IPR003657WRKY domain
PROSITE profilePS5081128.759159225IPR003657WRKY domain
SMARTSM007742.0E-35164224IPR003657WRKY domain
PfamPF031061.3E-25166223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MEASAVEAEL RRVVDENRRL RGMLEELTRS YGTLYQQLLQ VTQHHPHQHQ HPDLMNNRSS  60
LPHTHLNTMG APNTSTRQLL EARASSTAQT QPDAGVEDEA SDGAGEASPS LSNNAGNNDS  120
DGKRKLSQDG TAPSRENGEQ ASSAELPGRK ARVSVRARSE APMISDGCQW RKYGQKMAKG  180
NPCPRAYYRC TMAVACPVRK QVQRCAEDKT ILVTTYEGHH NHPLPPAATT MANTTSAAAS  240
MLLSGPATSR DGAAALLGHP AALFHHHASI PYASTMATLS ASAPFPTITL DLTQAPGSGG  300
GVGGLLGHGL QRPPVGMIHP AVAPAMPFPV PSPLAMFLPQ RAPPTAAAAP AGLVARQQQQ  360
QSVMETVTAA IATDPNFTTA LAAAISSVMA GAGGAHHQAQ PTPRGSNTTG IAGEADGSAA  420
GAAPAAPTTT AAGAHAASGG SPRLATQSCT TSTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-22155225877Probable WRKY transcription factor 4
2lex_A6e-22155225877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G031200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967624.10.0probable WRKY transcription factor 31
TrEMBLK3XG050.0K3XG05_SETIT; Uncharacterized protein
STRINGSi000824m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.14e-60WRKY family protein