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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G031200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 574aa MW: 59606 Da PI: 6.9637 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.1 | 4.8e-30 | 284 | 342 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a Cpv+k+v+r+aed++++++tYeg+Hnh+ Sevir.5G031200.1.p 284 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvACPVRKQVQRCAEDKTILVTTYEGHHNHP 342 7****************************9****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-32 | 268 | 344 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-27 | 276 | 344 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.759 | 278 | 344 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-35 | 283 | 343 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-25 | 285 | 342 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence Send to blast |
METKKPERHC HDHVHDEEES QEGEDAPAME HGALSLHRGA TLFGQRHHEE AAAGRRGEIR 60 EVDFFSRDSG ARQQDDGGGG RRVTGGGRDD LNIGLDLLTT ATAATASAGE EVTAAKNHKM 120 EASAVEAELR RVVDENRRLR GMLEELTRSY GTLYQQLLQV TQHHPHQHQH PDLMNNRSSL 180 PHTHLNTMGA PNTSTRQLLE ARASSTAQTQ PDAGVEDEAS DGAGEASPSL SNNAGNNDSD 240 GKRKLSQDGT APSRENGEQA SSAELPGRKA RVSVRARSEA PMISDGCQWR KYGQKMAKGN 300 PCPRAYYRCT MAVACPVRKQ VQRCAEDKTI LVTTYEGHHN HPLPPAATTM ANTTSAAASM 360 LLSGPATSRD GAAALLGHPA ALFHHHASIP YASTMATLSA SAPFPTITLD LTQAPGSGGG 420 VGGLLGHGLQ RPPVGMIHPA VAPAMPFPVP SPLAMFLPQR APPTAAAAPA GLVARQQQQQ 480 SVMETVTAAI ATDPNFTTAL AAAISSVMAG AGGAHHQAQP TPRGSNTTGI AGEADGSAAG 540 AAPAAPTTTA AGAHAASGGS PRLATQSCTT STT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-21 | 274 | 344 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-21 | 274 | 344 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 86 | GGRRVTGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G031200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967624.1 | 0.0 | probable WRKY transcription factor 31 | ||||
TrEMBL | K3XG05 | 0.0 | K3XG05_SETIT; Uncharacterized protein | ||||
STRING | Si000824m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4358 | 32 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-59 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G031200.1.p |