PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.5G029400.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 882aa MW: 98290.3 Da PI: 6.9382 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 121.8 | 3.1e-38 | 131 | 207 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv+gC+adls a++yh+rhkvCe+h++++vv+++++e+rfCqqCsrfh l+efDe+k+sCr+rLakhn rrrk q+ Sevir.5G029400.4.p 131 CQVDGCHADLSGARDYHKRHKVCEAHTRTSVVCIKNVEHRFCQQCSRFHLLQEFDEGKKSCRSRLAKHNGRRRKGQP 207 **************************************************************************876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-31 | 123 | 192 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.718 | 128 | 205 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-35 | 129 | 208 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-28 | 131 | 204 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 1.58E-5 | 653 | 760 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 7.11E-5 | 655 | 760 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 882 aa Download sequence Send to blast |
MEAGFLWKES GDQAGAARMS GGHNKNKNKS LEWDLNDWRW DANLFLATPA AAAPSECSSR 60 ELSRAQGEID FGVVVDKRRR LSPEEDGSAG CSNDSAVANG DNGHVVSVQR RRSSEEERPR 120 KGASSSTPPS CQVDGCHADL SGARDYHKRH KVCEAHTRTS VVCIKNVEHR FCQQCSRFHL 180 LQEFDEGKKS CRSRLAKHNG RRRKGQPQGA VVGNPTNENK SLSSALFLLL KQLSGLESGS 240 SSGQINHPNY LVNLMKNLAA VASTQAYQDI LNNANSNPTS NAGNNAANGS TMHELTIQSI 300 PVGSEPLAEG PPVKKRVQDF DLNDACIEEV ERRTDKIVFK LFGKEPKDFP VDLREQILNW 360 LSHCPTDMES YIRPGCVILT VYLRLPNWMW DELDDDPAPW IEKLISMSND GFWRTGWVYA 420 RVQECLTLSC NGRLILASPW QPVIGDRLQR LCVTPIAVAC SSTAKFCVQG FNIVQPTTKL 480 LCVFGEKYLI QEETQTLLED TTRQQGRQCL TFSCSFPSTS GRGFIEVEDY DQSSLSVPFV 540 VTDKDVCSEI RMLEHELDLS SFDETSERIG DLMASRSRAL HFLQEIGWLL QRSHMQATSE 600 QRQYSTEGFS VERFRWLLSF AIDQEWCAVV NKLLNTMFRG DIGLDVPSPV EFALGENLLL 660 TAVNKRSKPL VQFLLRYTIT NYAPDIDPVQ FLFTPDMTGP SNITPLHIAA TISDTTGVLD 720 ALTDDPQQLG IKVWKTARDD TGLTPEDYAQ KRGHISYIQM VQDKIDRRLP KAHVSVAIPS 780 RPSATDTITK HASHLKSTDQ TAFDVEKSAR SIINQPLSCG QCVHQLAYRP RTNRFFSTRP 840 AMLSLVAIAA VCVCVGLIMK SPPQVSSMKP FLWEKITWGP N* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-25 | 123 | 204 | 3 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 76 | 80 | KRRRL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.5G029400.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014660814.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
Swissprot | Q9LGU7 | 0.0 | SPL1_ORYSJ; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | K3XEE2 | 0.0 | K3XEE2_SETIT; Uncharacterized protein | ||||
STRING | Si000259m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47070.1 | 1e-135 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.5G029400.4.p |
Publications ? help Back to Top | |||
---|---|---|---|
|